Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00296

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00294 and CCNA_00295 are separated by 25 nucleotidesCCNA_00295 and CCNA_00296 are separated by 21 nucleotidesCCNA_00296 and CCNA_00297 overlap by 28 nucleotidesCCNA_00297 and CCNA_00298 overlap by 4 nucleotides CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634 _00294 CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352 _00295 CCNA_00296: CCNA_00296 - phosphate regulon response regulator PhoB, at 310,374 to 311,066 _00296 CCNA_00297: CCNA_00297 - two-component response regulator, at 311,039 to 311,896 _00297 CCNA_00298: CCNA_00298 - hypothetical protein, at 311,893 to 312,666 _00298 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 309.550 kb on + strand, within CCNA_00294at 310.316 kb on - strandat 310.331 kb on + strandat 310.332 kb on - strandat 310.346 kb on - strandat 310.361 kb on - strandat 310.394 kb on + strandat 310.403 kb on - strandat 310.418 kb on - strandat 310.485 kb on + strand, within CCNA_00296at 310.493 kb on - strand, within CCNA_00296at 310.493 kb on - strand, within CCNA_00296at 310.495 kb on + strand, within CCNA_00296at 310.498 kb on - strand, within CCNA_00296at 310.510 kb on + strand, within CCNA_00296at 310.525 kb on + strand, within CCNA_00296at 310.547 kb on + strand, within CCNA_00296at 310.548 kb on + strand, within CCNA_00296at 310.549 kb on - strand, within CCNA_00296at 310.556 kb on - strand, within CCNA_00296at 310.602 kb on + strand, within CCNA_00296at 310.702 kb on - strand, within CCNA_00296at 310.744 kb on + strand, within CCNA_00296at 310.757 kb on - strand, within CCNA_00296at 310.757 kb on - strand, within CCNA_00296at 310.771 kb on - strand, within CCNA_00296at 310.789 kb on - strand, within CCNA_00296at 310.807 kb on + strand, within CCNA_00296at 310.834 kb on + strand, within CCNA_00296at 310.834 kb on + strand, within CCNA_00296at 310.842 kb on - strand, within CCNA_00296at 310.849 kb on + strand, within CCNA_00296at 310.898 kb on - strand, within CCNA_00296at 310.898 kb on - strand, within CCNA_00296at 310.898 kb on - strand, within CCNA_00296at 310.934 kb on + strand, within CCNA_00296at 310.986 kb on + strand, within CCNA_00296at 311.017 kb on + strandat 311.023 kb on - strandat 311.061 kb on + strandat 311.061 kb on + strandat 311.081 kb on - strandat 311.088 kb on + strandat 311.091 kb on + strandat 311.091 kb on + strandat 311.121 kb on - strandat 311.131 kb on - strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.155 kb on + strand, within CCNA_00297at 311.177 kb on + strand, within CCNA_00297at 311.177 kb on + strand, within CCNA_00297at 311.178 kb on + strand, within CCNA_00297at 311.180 kb on - strand, within CCNA_00297at 311.185 kb on - strand, within CCNA_00297at 311.185 kb on - strand, within CCNA_00297at 311.186 kb on - strand, within CCNA_00297at 311.186 kb on - strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.203 kb on + strand, within CCNA_00297at 311.203 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.210 kb on - strand, within CCNA_00297at 311.215 kb on - strand, within CCNA_00297at 311.253 kb on - strand, within CCNA_00297at 311.257 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.321 kb on + strand, within CCNA_00297at 311.329 kb on - strand, within CCNA_00297at 311.354 kb on + strand, within CCNA_00297at 311.366 kb on + strand, within CCNA_00297at 311.374 kb on - strand, within CCNA_00297at 311.384 kb on - strand, within CCNA_00297at 311.408 kb on + strand, within CCNA_00297at 311.408 kb on + strand, within CCNA_00297at 311.429 kb on + strand, within CCNA_00297at 311.429 kb on + strand, within CCNA_00297at 311.453 kb on - strand, within CCNA_00297at 311.460 kb on - strand, within CCNA_00297at 311.471 kb on + strand, within CCNA_00297at 311.471 kb on + strand, within CCNA_00297at 311.479 kb on - strand, within CCNA_00297at 311.492 kb on - strand, within CCNA_00297at 311.538 kb on + strand, within CCNA_00297at 311.594 kb on + strand, within CCNA_00297at 311.602 kb on - strand, within CCNA_00297at 311.602 kb on - strand, within CCNA_00297at 311.634 kb on + strand, within CCNA_00297at 311.651 kb on + strand, within CCNA_00297at 311.678 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.711 kb on - strand, within CCNA_00297at 311.711 kb on - strand, within CCNA_00297at 311.744 kb on - strand, within CCNA_00297at 311.746 kb on + strand, within CCNA_00297at 311.749 kb on - strand, within CCNA_00297at 311.756 kb on + strand, within CCNA_00297at 311.757 kb on + strand, within CCNA_00297at 311.757 kb on - strand, within CCNA_00297at 311.765 kb on - strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.780 kb on - strand, within CCNA_00297at 311.783 kb on - strand, within CCNA_00297at 311.841 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.854 kb on - strandat 311.877 kb on + strandat 311.879 kb on + strandat 311.880 kb on - strandat 311.908 kb on - strandat 311.922 kb on + strandat 311.922 kb on + strandat 311.933 kb on - strandat 311.936 kb on + strandat 311.954 kb on + strandat 311.962 kb on - strandat 311.962 kb on - strandat 311.972 kb on + strand, within CCNA_00298at 311.977 kb on + strand, within CCNA_00298at 311.977 kb on + strand, within CCNA_00298at 311.982 kb on + strand, within CCNA_00298at 312.013 kb on - strand, within CCNA_00298at 312.033 kb on + strand, within CCNA_00298at 312.036 kb on - strand, within CCNA_00298at 312.047 kb on - strand, within CCNA_00298

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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309,550 + CCNA_00294 0.90 -3.2
310,316 - +0.2
310,331 + +1.8
310,332 - -0.7
310,346 - +0.1
310,361 - +0.1
310,394 + +0.1
310,403 - -1.3
310,418 - +0.3
310,485 + CCNA_00296 0.16 -0.8
310,493 - CCNA_00296 0.17 -2.5
310,493 - CCNA_00296 0.17 +0.3
310,495 + CCNA_00296 0.17 +1.7
310,498 - CCNA_00296 0.18 -2.2
310,510 + CCNA_00296 0.20 -1.6
310,525 + CCNA_00296 0.22 -0.2
310,547 + CCNA_00296 0.25 -1.0
310,548 + CCNA_00296 0.25 -0.2
310,549 - CCNA_00296 0.25 -0.0
310,556 - CCNA_00296 0.26 -0.8
310,602 + CCNA_00296 0.33 -1.5
310,702 - CCNA_00296 0.47 -1.3
310,744 + CCNA_00296 0.53 -1.7
310,757 - CCNA_00296 0.55 +0.9
310,757 - CCNA_00296 0.55 -1.2
310,771 - CCNA_00296 0.57 -1.6
310,789 - CCNA_00296 0.60 +0.6
310,807 + CCNA_00296 0.62 -0.7
310,834 + CCNA_00296 0.66 -1.3
310,834 + CCNA_00296 0.66 -0.1
310,842 - CCNA_00296 0.68 -2.9
310,849 + CCNA_00296 0.69 +0.0
310,898 - CCNA_00296 0.76 -1.2
310,898 - CCNA_00296 0.76 -1.1
310,898 - CCNA_00296 0.76 -1.2
310,934 + CCNA_00296 0.81 -1.2
310,986 + CCNA_00296 0.88 -1.1
311,017 + -2.0
311,023 - +1.2
311,061 + -0.3
311,061 + +0.0
311,081 - -0.3
311,088 + -0.2
311,091 + +0.7
311,091 + +0.5
311,121 - +0.4
311,131 - CCNA_00297 0.11 -0.4
311,144 + CCNA_00297 0.12 +0.9
311,144 + CCNA_00297 0.12 +0.7
311,144 + CCNA_00297 0.12 -0.3
311,144 + CCNA_00297 0.12 +2.1
311,155 + CCNA_00297 0.14 +0.4
311,177 + CCNA_00297 0.16 +1.3
311,177 + CCNA_00297 0.16 +0.8
311,178 + CCNA_00297 0.16 +0.6
311,180 - CCNA_00297 0.16 +0.2
311,185 - CCNA_00297 0.17 -0.2
311,185 - CCNA_00297 0.17 -0.1
311,186 - CCNA_00297 0.17 -0.3
311,186 - CCNA_00297 0.17 -0.8
311,193 + CCNA_00297 0.18 +0.0
311,193 + CCNA_00297 0.18 -0.2
311,193 + CCNA_00297 0.18 +0.1
311,203 + CCNA_00297 0.19 +0.1
311,203 + CCNA_00297 0.19 +0.6
311,207 + CCNA_00297 0.20 +0.3
311,207 + CCNA_00297 0.20 -1.2
311,207 + CCNA_00297 0.20 -1.9
311,210 - CCNA_00297 0.20 -0.1
311,215 - CCNA_00297 0.21 -0.5
311,253 - CCNA_00297 0.25 +0.0
311,257 + CCNA_00297 0.25 +0.3
311,267 + CCNA_00297 0.27 +0.9
311,267 + CCNA_00297 0.27 -0.3
311,275 - CCNA_00297 0.28 -0.5
311,275 - CCNA_00297 0.28 +0.7
311,275 - CCNA_00297 0.28 +0.4
311,275 - CCNA_00297 0.28 +0.1
311,282 + CCNA_00297 0.28 +0.0
311,282 + CCNA_00297 0.28 +0.1
311,282 + CCNA_00297 0.28 +0.0
311,290 - CCNA_00297 0.29 +0.6
311,290 - CCNA_00297 0.29 +0.7
311,321 + CCNA_00297 0.33 +0.1
311,329 - CCNA_00297 0.34 -0.5
311,354 + CCNA_00297 0.37 +1.0
311,366 + CCNA_00297 0.38 +0.2
311,374 - CCNA_00297 0.39 +0.1
311,384 - CCNA_00297 0.40 +0.6
311,408 + CCNA_00297 0.43 -1.5
311,408 + CCNA_00297 0.43 +0.5
311,429 + CCNA_00297 0.45 -0.7
311,429 + CCNA_00297 0.45 -0.3
311,453 - CCNA_00297 0.48 -0.1
311,460 - CCNA_00297 0.49 -0.2
311,471 + CCNA_00297 0.50 -0.0
311,471 + CCNA_00297 0.50 -0.9
311,479 - CCNA_00297 0.51 -0.1
311,492 - CCNA_00297 0.53 +0.3
311,538 + CCNA_00297 0.58 +0.4
311,594 + CCNA_00297 0.65 -0.1
311,602 - CCNA_00297 0.66 +0.8
311,602 - CCNA_00297 0.66 +0.4
311,634 + CCNA_00297 0.69 -0.1
311,651 + CCNA_00297 0.71 +0.1
311,678 - CCNA_00297 0.74 +0.5
311,690 - CCNA_00297 0.76 +0.2
311,711 - CCNA_00297 0.78 -0.2
311,711 - CCNA_00297 0.78 -1.6
311,744 - CCNA_00297 0.82 +0.3
311,746 + CCNA_00297 0.82 -1.0
311,749 - CCNA_00297 0.83 +0.0
311,756 + CCNA_00297 0.84 +0.6
311,757 + CCNA_00297 0.84 +0.0
311,757 - CCNA_00297 0.84 -0.5
311,765 - CCNA_00297 0.85 -0.4
311,772 + CCNA_00297 0.85 -1.9
311,772 + CCNA_00297 0.85 -0.3
311,780 - CCNA_00297 0.86 -0.5
311,783 - CCNA_00297 0.87 +1.7
311,841 + -2.3
311,846 + -1.3
311,846 + +0.4
311,846 + -0.7
311,854 - +0.6
311,854 - -0.8
311,854 - +0.8
311,854 - +0.6
311,854 - -0.2
311,877 + +1.3
311,879 + -0.0
311,880 - -0.3
311,908 - -0.3
311,922 + -0.0
311,922 + -0.8
311,933 - -0.4
311,936 + -0.4
311,954 + +0.2
311,962 - -0.9
311,962 - +0.5
311,972 + CCNA_00298 0.10 -0.9
311,977 + CCNA_00298 0.11 -0.9
311,977 + CCNA_00298 0.11 +0.9
311,982 + CCNA_00298 0.11 +0.4
312,013 - CCNA_00298 0.16 +0.3
312,033 + CCNA_00298 0.18 -0.5
312,036 - CCNA_00298 0.18 -0.1
312,047 - CCNA_00298 0.20 -0.0

Or see this region's nucleotide sequence