Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00292 and CCNA_00293 overlap by 8 nucleotides CCNA_00293 and CCNA_00294 are separated by 59 nucleotides CCNA_00294 and CCNA_00295 are separated by 25 nucleotides
CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462
_00292
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634
_00294
CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352
_00295
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 306.501 kb on - strand, within CCNA_00292 at 306.530 kb on + strand, within CCNA_00292 at 306.581 kb on + strand, within CCNA_00292 at 306.581 kb on + strand, within CCNA_00292 at 306.589 kb on - strand, within CCNA_00292 at 306.655 kb on + strand, within CCNA_00292 at 306.818 kb on + strand, within CCNA_00292 at 306.908 kb on + strand, within CCNA_00292 at 306.928 kb on - strand, within CCNA_00292 at 306.967 kb on - strand, within CCNA_00292 at 307.350 kb on + strand at 307.382 kb on - strand at 307.406 kb on + strand at 307.421 kb on + strand at 307.469 kb on + strand at 307.487 kb on + strand at 307.621 kb on - strand, within CCNA_00293 at 307.758 kb on + strand, within CCNA_00293 at 307.794 kb on + strand, within CCNA_00293 at 308.124 kb on + strand, within CCNA_00293 at 308.136 kb on + strand, within CCNA_00293 at 308.172 kb on - strand, within CCNA_00293 at 308.258 kb on + strand, within CCNA_00293 at 308.442 kb on + strand, within CCNA_00293 at 308.652 kb on - strand at 308.687 kb on - strand at 308.751 kb on - strand at 308.804 kb on - strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.895 kb on - strand, within CCNA_00294 at 309.045 kb on + strand, within CCNA_00294 at 309.248 kb on + strand, within CCNA_00294 at 309.550 kb on + strand, within CCNA_00294
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 306,501 - CCNA_00292 0.33 +1.7 306,530 + CCNA_00292 0.35 +0.3 306,581 + CCNA_00292 0.38 -0.1 306,581 + CCNA_00292 0.38 -2.3 306,589 - CCNA_00292 0.39 +0.3 306,655 + CCNA_00292 0.44 -1.2 306,818 + CCNA_00292 0.55 +0.7 306,908 + CCNA_00292 0.61 +1.7 306,928 - CCNA_00292 0.63 +0.1 306,967 - CCNA_00292 0.65 +0.1 307,350 + +0.7 307,382 - +0.1 307,406 + +0.3 307,421 + +0.5 307,469 + -0.5 307,487 + +0.3 307,621 - CCNA_00293 0.13 -0.7 307,758 + CCNA_00293 0.23 -1.6 307,794 + CCNA_00293 0.26 +0.1 308,124 + CCNA_00293 0.52 +0.3 308,136 + CCNA_00293 0.53 -1.4 308,172 - CCNA_00293 0.55 +0.7 308,258 + CCNA_00293 0.62 -1.5 308,442 + CCNA_00293 0.76 -0.5 308,652 - +0.3 308,687 - -1.0 308,751 - -1.1 308,804 - +1.0 308,806 + +0.3 308,806 + +0.2 308,806 + +0.1 308,806 + +0.6 308,806 + -1.9 308,806 + -0.1 308,806 + +0.4 308,806 + +0.1 308,814 - -3.5 308,814 - +1.5 308,814 - -1.1 308,814 - -0.9 308,814 - +0.6 308,895 - CCNA_00294 0.10 +0.1 309,045 + CCNA_00294 0.28 -0.9 309,248 + CCNA_00294 0.53 -1.9 309,550 + CCNA_00294 0.90 -3.2
Or see this region's nucleotide sequence