Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00264

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00262 and CCNA_00263 are separated by 21 nucleotidesCCNA_00263 and CCNA_00264 are separated by 146 nucleotidesCCNA_00264 and CCNA_00265 are separated by 379 nucleotides CCNA_00262: CCNA_00262 - ketopantoate reductase panE/ApbA family protein, at 274,921 to 275,793 _00262 CCNA_00263: CCNA_00263 - hypothetical protein, at 275,815 to 276,237 _00263 CCNA_00264: CCNA_00264 - C4-dicarboxylate transport protein, at 276,384 to 277,637 _00264 CCNA_00265: CCNA_00265 - AMP nucleosidase, at 278,017 to 279,471 _00265 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1at 275.387 kb on + strand, within CCNA_00262at 275.388 kb on - strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.482 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.512 kb on - strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.524 kb on - strand, within CCNA_00262at 275.526 kb on + strand, within CCNA_00262at 275.542 kb on + strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.694 kb on - strand, within CCNA_00262at 275.753 kb on + strandat 275.768 kb on - strandat 275.772 kb on + strandat 275.780 kb on - strandat 275.780 kb on - strandat 275.787 kb on + strandat 275.787 kb on + strandat 275.787 kb on + strandat 275.787 kb on + strandat 275.787 kb on + strandat 275.795 kb on - strandat 275.795 kb on - strandat 275.795 kb on - strandat 275.838 kb on + strandat 275.840 kb on + strandat 275.840 kb on + strandat 275.840 kb on + strandat 275.840 kb on + strandat 275.848 kb on - strandat 275.870 kb on - strand, within CCNA_00263at 275.892 kb on - strand, within CCNA_00263at 275.892 kb on - strand, within CCNA_00263at 275.898 kb on + strand, within CCNA_00263at 275.898 kb on + strand, within CCNA_00263at 275.906 kb on - strand, within CCNA_00263at 275.949 kb on + strand, within CCNA_00263at 275.959 kb on + strand, within CCNA_00263at 275.966 kb on + strand, within CCNA_00263at 275.971 kb on + strand, within CCNA_00263at 275.979 kb on - strand, within CCNA_00263at 275.979 kb on - strand, within CCNA_00263at 275.992 kb on + strand, within CCNA_00263at 275.992 kb on + strand, within CCNA_00263at 276.007 kb on + strand, within CCNA_00263at 276.013 kb on + strand, within CCNA_00263at 276.021 kb on - strand, within CCNA_00263at 276.048 kb on + strand, within CCNA_00263at 276.048 kb on + strand, within CCNA_00263at 276.048 kb on + strand, within CCNA_00263at 276.056 kb on - strand, within CCNA_00263at 276.058 kb on - strand, within CCNA_00263at 276.058 kb on - strand, within CCNA_00263at 276.058 kb on - strand, within CCNA_00263at 276.060 kb on + strand, within CCNA_00263at 276.070 kb on + strand, within CCNA_00263at 276.070 kb on + strand, within CCNA_00263at 276.102 kb on + strand, within CCNA_00263at 276.139 kb on - strand, within CCNA_00263at 276.159 kb on - strand, within CCNA_00263at 276.194 kb on + strand, within CCNA_00263at 276.207 kb on - strandat 276.207 kb on - strandat 276.207 kb on - strandat 276.240 kb on - strandat 276.249 kb on - strandat 276.366 kb on - strandat 276.382 kb on + strandat 276.390 kb on - strandat 276.417 kb on - strandat 276.665 kb on + strand, within CCNA_00264at 276.665 kb on + strand, within CCNA_00264at 276.706 kb on + strand, within CCNA_00264at 276.711 kb on + strand, within CCNA_00264at 276.792 kb on + strand, within CCNA_00264at 276.796 kb on - strand, within CCNA_00264at 276.854 kb on - strand, within CCNA_00264at 276.926 kb on + strand, within CCNA_00264at 277.001 kb on - strand, within CCNA_00264at 277.058 kb on + strand, within CCNA_00264at 277.289 kb on + strand, within CCNA_00264at 277.313 kb on - strand, within CCNA_00264at 277.355 kb on - strand, within CCNA_00264at 277.387 kb on + strand, within CCNA_00264at 277.426 kb on + strand, within CCNA_00264at 277.434 kb on - strand, within CCNA_00264at 277.444 kb on - strand, within CCNA_00264at 277.459 kb on + strand, within CCNA_00264at 277.551 kb on - strandat 277.581 kb on + strandat 277.597 kb on - strandat 277.718 kb on + strandat 277.736 kb on - strandat 277.736 kb on - strandat 277.763 kb on + strandat 277.763 kb on + strandat 277.780 kb on + strandat 277.782 kb on - strandat 277.788 kb on - strandat 277.800 kb on + strandat 277.809 kb on + strandat 277.827 kb on + strandat 277.846 kb on - strandat 277.878 kb on + strandat 277.899 kb on + strandat 277.907 kb on - strandat 277.980 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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275,387 + CCNA_00262 0.53 +0.2
275,388 - CCNA_00262 0.53 -0.0
275,449 + CCNA_00262 0.60 +0.1
275,449 + CCNA_00262 0.60 +0.3
275,449 + CCNA_00262 0.60 +1.0
275,457 - CCNA_00262 0.61 +0.4
275,457 - CCNA_00262 0.61 +0.6
275,482 - CCNA_00262 0.64 -0.5
275,512 - CCNA_00262 0.68 +0.1
275,512 - CCNA_00262 0.68 -0.6
275,512 - CCNA_00262 0.68 -0.7
275,521 + CCNA_00262 0.69 +0.6
275,524 - CCNA_00262 0.69 -1.6
275,526 + CCNA_00262 0.69 -0.4
275,542 + CCNA_00262 0.71 +0.2
275,615 - CCNA_00262 0.79 -0.2
275,694 - CCNA_00262 0.89 +0.3
275,753 + +0.6
275,768 - -0.2
275,772 + +0.9
275,780 - +0.1
275,780 - +0.3
275,787 + +0.2
275,787 + +0.2
275,787 + +0.4
275,787 + +1.3
275,787 + -0.0
275,795 - -0.3
275,795 - -0.0
275,795 - -0.0
275,838 + -0.5
275,840 + +0.1
275,840 + +1.1
275,840 + -0.8
275,840 + -0.5
275,848 - +1.2
275,870 - CCNA_00263 0.13 +0.1
275,892 - CCNA_00263 0.18 -0.5
275,892 - CCNA_00263 0.18 +0.4
275,898 + CCNA_00263 0.20 -0.7
275,898 + CCNA_00263 0.20 -0.4
275,906 - CCNA_00263 0.22 -0.3
275,949 + CCNA_00263 0.32 +0.3
275,959 + CCNA_00263 0.34 -0.1
275,966 + CCNA_00263 0.36 +0.8
275,971 + CCNA_00263 0.37 -0.2
275,979 - CCNA_00263 0.39 -0.0
275,979 - CCNA_00263 0.39 -0.1
275,992 + CCNA_00263 0.42 -0.7
275,992 + CCNA_00263 0.42 -0.3
276,007 + CCNA_00263 0.45 +0.4
276,013 + CCNA_00263 0.47 -0.1
276,021 - CCNA_00263 0.49 -0.1
276,048 + CCNA_00263 0.55 +0.2
276,048 + CCNA_00263 0.55 -0.4
276,048 + CCNA_00263 0.55 -1.0
276,056 - CCNA_00263 0.57 +0.9
276,058 - CCNA_00263 0.57 +0.0
276,058 - CCNA_00263 0.57 +0.9
276,058 - CCNA_00263 0.57 -0.2
276,060 + CCNA_00263 0.58 -0.5
276,070 + CCNA_00263 0.60 +0.1
276,070 + CCNA_00263 0.60 -0.3
276,102 + CCNA_00263 0.68 -0.5
276,139 - CCNA_00263 0.77 -0.1
276,159 - CCNA_00263 0.81 +0.2
276,194 + CCNA_00263 0.90 +0.2
276,207 - -0.2
276,207 - -0.1
276,207 - -0.2
276,240 - +0.1
276,249 - +0.2
276,366 - -0.2
276,382 + -0.3
276,390 - +0.1
276,417 - +0.7
276,665 + CCNA_00264 0.22 +0.4
276,665 + CCNA_00264 0.22 +0.4
276,706 + CCNA_00264 0.26 -0.9
276,711 + CCNA_00264 0.26 -1.5
276,792 + CCNA_00264 0.33 +0.0
276,796 - CCNA_00264 0.33 -0.9
276,854 - CCNA_00264 0.37 -0.2
276,926 + CCNA_00264 0.43 -0.9
277,001 - CCNA_00264 0.49 -0.8
277,058 + CCNA_00264 0.54 -1.7
277,289 + CCNA_00264 0.72 -0.3
277,313 - CCNA_00264 0.74 -0.3
277,355 - CCNA_00264 0.77 -1.0
277,387 + CCNA_00264 0.80 -0.7
277,426 + CCNA_00264 0.83 -0.3
277,434 - CCNA_00264 0.84 -2.4
277,444 - CCNA_00264 0.85 -0.7
277,459 + CCNA_00264 0.86 -1.3
277,551 - -1.3
277,581 + -2.0
277,597 - -0.4
277,718 + -1.5
277,736 - +0.9
277,736 - +1.0
277,763 + -0.1
277,763 + -0.0
277,780 + -1.1
277,782 - -0.7
277,788 - -0.7
277,800 + +0.5
277,809 + -0.5
277,827 + +1.3
277,846 - +0.1
277,878 + -0.1
277,899 + -0.2
277,907 - -0.7
277,980 - -0.7

Or see this region's nucleotide sequence