Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00240

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00238 and CCNA_00239 overlap by 4 nucleotidesCCNA_00239 and CCNA_00240 are separated by 75 nucleotidesCCNA_00240 and CCNA_00241 overlap by 4 nucleotidesCCNA_00241 and CCNA_03917 are separated by 239 nucleotidesCCNA_03917 and CCNA_00243 are separated by 67 nucleotides CCNA_00238: CCNA_00238 - two-component sensor histidine kinase chvG, at 253,207 to 254,811 _00238 CCNA_00239: CCNA_00239 - serine kinase/phosphatase HprK, at 254,808 to 255,242 _00239 CCNA_00240: CCNA_00240 - PTS system, IIA component, at 255,318 to 255,725 _00240 CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000 _00241 CCNA_03917: CCNA_03917 - hypothetical protein, at 256,240 to 256,344 _03917 CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 Position (kb) 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 254.850 kb on - strandat 254.899 kb on + strand, within CCNA_00239at 254.914 kb on + strand, within CCNA_00239at 255.002 kb on - strand, within CCNA_00239at 255.231 kb on - strandat 255.233 kb on - strandat 255.257 kb on - strandat 255.271 kb on - strandat 255.276 kb on - strandat 255.315 kb on + strandat 255.370 kb on + strand, within CCNA_00240at 255.381 kb on - strand, within CCNA_00240at 255.403 kb on + strand, within CCNA_00240at 255.460 kb on + strand, within CCNA_00240at 255.566 kb on + strand, within CCNA_00240at 255.574 kb on - strand, within CCNA_00240at 255.642 kb on + strand, within CCNA_00240at 255.647 kb on + strand, within CCNA_00240at 255.655 kb on - strand, within CCNA_00240at 255.905 kb on - strand, within CCNA_00241at 255.997 kb on + strandat 256.005 kb on - strandat 256.005 kb on - strandat 256.017 kb on + strandat 256.041 kb on + strandat 256.049 kb on - strandat 256.124 kb on + strandat 256.132 kb on - strandat 256.134 kb on + strandat 256.142 kb on - strandat 256.142 kb on - strandat 256.142 kb on - strandat 256.165 kb on - strandat 256.171 kb on - strandat 256.178 kb on + strandat 256.206 kb on + strandat 256.206 kb on + strandat 256.214 kb on - strandat 256.214 kb on - strandat 256.245 kb on + strandat 256.251 kb on + strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.342 kb on + strandat 256.394 kb on + strandat 256.396 kb on - strandat 256.440 kb on - strandat 256.475 kb on - strand, within CCNA_00243at 256.508 kb on + strand, within CCNA_00243at 256.528 kb on - strand, within CCNA_00243at 256.547 kb on - strand, within CCNA_00243at 256.574 kb on + strand, within CCNA_00243at 256.574 kb on + strand, within CCNA_00243at 256.574 kb on + strand, within CCNA_00243at 256.574 kb on + strand, within CCNA_00243at 256.602 kb on - strand, within CCNA_00243at 256.604 kb on + strand, within CCNA_00243at 256.604 kb on + strand, within CCNA_00243at 256.653 kb on + strand, within CCNA_00243at 256.657 kb on - strand, within CCNA_00243at 256.657 kb on - strand, within CCNA_00243at 256.682 kb on - strand, within CCNA_00243at 256.687 kb on - strand, within CCNA_00243at 256.705 kb on + strand, within CCNA_00243at 256.705 kb on + strand, within CCNA_00243at 256.710 kb on + strand, within CCNA_00243

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
254,850 - +1.3
254,899 + CCNA_00239 0.21 +0.7
254,914 + CCNA_00239 0.24 -1.0
255,002 - CCNA_00239 0.45 +0.1
255,231 - -0.4
255,233 - -0.7
255,257 - -1.1
255,271 - -0.1
255,276 - +0.2
255,315 + +0.1
255,370 + CCNA_00240 0.13 -0.5
255,381 - CCNA_00240 0.15 +0.7
255,403 + CCNA_00240 0.21 +0.7
255,460 + CCNA_00240 0.35 +2.2
255,566 + CCNA_00240 0.61 -0.8
255,574 - CCNA_00240 0.63 +0.3
255,642 + CCNA_00240 0.79 -0.3
255,647 + CCNA_00240 0.81 +0.7
255,655 - CCNA_00240 0.83 +0.3
255,905 - CCNA_00241 0.66 -0.3
255,997 + +0.2
256,005 - -0.1
256,005 - +1.5
256,017 + +0.2
256,041 + +0.2
256,049 - -0.2
256,124 + -0.0
256,132 - +0.8
256,134 + -1.0
256,142 - +0.0
256,142 - +0.2
256,142 - +0.2
256,165 - -0.2
256,171 - -0.2
256,178 + -1.5
256,206 + -0.5
256,206 + -2.7
256,214 - -0.6
256,214 - +0.1
256,245 + -0.1
256,251 + CCNA_03917 0.10 -0.6
256,321 - CCNA_03917 0.77 +0.1
256,321 - CCNA_03917 0.77 -0.3
256,342 + +0.7
256,394 + -0.5
256,396 - -0.8
256,440 - -0.0
256,475 - CCNA_00243 0.16 +1.1
256,508 + CCNA_00243 0.24 -1.3
256,528 - CCNA_00243 0.29 +0.4
256,547 - CCNA_00243 0.34 +0.4
256,574 + CCNA_00243 0.41 +0.2
256,574 + CCNA_00243 0.41 +0.8
256,574 + CCNA_00243 0.41 -0.3
256,574 + CCNA_00243 0.41 -2.4
256,602 - CCNA_00243 0.48 +0.2
256,604 + CCNA_00243 0.48 -0.9
256,604 + CCNA_00243 0.48 -0.5
256,653 + CCNA_00243 0.60 -0.3
256,657 - CCNA_00243 0.61 +0.7
256,657 - CCNA_00243 0.61 -0.1
256,682 - CCNA_00243 0.68 -0.2
256,687 - CCNA_00243 0.69 -0.1
256,705 + CCNA_00243 0.73 +1.3
256,705 + CCNA_00243 0.73 -1.1
256,710 + CCNA_00243 0.75 +0.1

Or see this region's nucleotide sequence