Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00221

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00218 and CCNA_00220 are separated by 152 nucleotidesCCNA_00220 and CCNA_00221 are separated by 6 nucleotidesCCNA_00221 and CCNA_00222 are separated by 104 nucleotides CCNA_00218: CCNA_00218 - hypothetical protein, at 236,131 to 236,877 _00218 CCNA_00220: CCNA_00220 - thiol-disulfide isomerase and thioredoxin, at 237,030 to 237,635 _00220 CCNA_00221: CCNA_00221 - hypothetical protein, at 237,642 to 238,136 _00221 CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860 _00222 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 236.699 kb on - strand, within CCNA_00218at 236.699 kb on - strand, within CCNA_00218at 236.762 kb on - strand, within CCNA_00218at 236.789 kb on - strand, within CCNA_00218at 236.791 kb on + strand, within CCNA_00218at 236.791 kb on + strand, within CCNA_00218at 236.799 kb on - strand, within CCNA_00218at 236.810 kb on + strandat 236.810 kb on + strandat 236.810 kb on + strandat 236.810 kb on + strandat 236.818 kb on - strandat 236.820 kb on + strandat 236.820 kb on + strandat 236.820 kb on - strandat 236.836 kb on + strandat 236.838 kb on - strandat 236.875 kb on + strandat 236.880 kb on - strandat 236.889 kb on - strandat 236.902 kb on - strandat 236.945 kb on - strandat 237.049 kb on - strandat 237.101 kb on - strand, within CCNA_00220at 237.161 kb on - strand, within CCNA_00220at 237.169 kb on - strand, within CCNA_00220at 237.172 kb on + strand, within CCNA_00220at 237.188 kb on - strand, within CCNA_00220at 237.190 kb on + strand, within CCNA_00220at 237.195 kb on + strand, within CCNA_00220at 237.203 kb on - strand, within CCNA_00220at 237.203 kb on - strand, within CCNA_00220at 237.203 kb on - strand, within CCNA_00220at 237.205 kb on + strand, within CCNA_00220at 237.213 kb on - strand, within CCNA_00220at 237.213 kb on - strand, within CCNA_00220at 237.244 kb on - strand, within CCNA_00220at 237.246 kb on + strand, within CCNA_00220at 237.344 kb on + strand, within CCNA_00220at 237.358 kb on - strand, within CCNA_00220at 237.364 kb on - strand, within CCNA_00220at 237.364 kb on - strand, within CCNA_00220at 237.371 kb on + strand, within CCNA_00220at 237.379 kb on + strand, within CCNA_00220at 237.379 kb on - strand, within CCNA_00220at 237.416 kb on + strand, within CCNA_00220at 237.416 kb on + strand, within CCNA_00220at 237.424 kb on - strand, within CCNA_00220at 237.461 kb on - strand, within CCNA_00220at 237.470 kb on + strand, within CCNA_00220at 237.471 kb on + strand, within CCNA_00220at 237.471 kb on + strand, within CCNA_00220at 237.519 kb on + strand, within CCNA_00220at 237.526 kb on - strand, within CCNA_00220at 237.534 kb on - strand, within CCNA_00220at 237.557 kb on - strand, within CCNA_00220at 237.600 kb on - strandat 237.620 kb on + strandat 237.620 kb on + strandat 237.628 kb on - strandat 237.628 kb on - strandat 237.647 kb on - strandat 237.672 kb on + strandat 237.674 kb on + strandat 237.674 kb on + strandat 237.682 kb on - strandat 237.713 kb on + strand, within CCNA_00221at 237.721 kb on - strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.782 kb on - strand, within CCNA_00221at 237.782 kb on - strand, within CCNA_00221at 237.799 kb on + strand, within CCNA_00221at 237.815 kb on - strand, within CCNA_00221at 237.833 kb on - strand, within CCNA_00221at 237.876 kb on - strand, within CCNA_00221at 237.891 kb on + strand, within CCNA_00221at 237.908 kb on - strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.936 kb on + strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.961 kb on + strand, within CCNA_00221at 237.985 kb on + strand, within CCNA_00221at 238.076 kb on + strand, within CCNA_00221at 238.096 kb on + strandat 238.096 kb on + strandat 238.096 kb on + strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.124 kb on + strandat 238.131 kb on + strandat 238.132 kb on - strandat 238.164 kb on - strandat 238.237 kb on + strandat 238.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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236,699 - CCNA_00218 0.76 +0.3
236,699 - CCNA_00218 0.76 -0.1
236,762 - CCNA_00218 0.84 -0.5
236,789 - CCNA_00218 0.88 +0.7
236,791 + CCNA_00218 0.88 -0.9
236,791 + CCNA_00218 0.88 -0.9
236,799 - CCNA_00218 0.89 +0.2
236,810 + +0.6
236,810 + -0.2
236,810 + -1.0
236,810 + +1.0
236,818 - +0.3
236,820 + -0.5
236,820 + +0.2
236,820 - +1.7
236,836 + +0.2
236,838 - -0.0
236,875 + -0.2
236,880 - +0.1
236,889 - +0.5
236,902 - +0.4
236,945 - -0.1
237,049 - +0.0
237,101 - CCNA_00220 0.12 -0.6
237,161 - CCNA_00220 0.22 +1.9
237,169 - CCNA_00220 0.23 +0.4
237,172 + CCNA_00220 0.23 +0.2
237,188 - CCNA_00220 0.26 -1.3
237,190 + CCNA_00220 0.26 +1.0
237,195 + CCNA_00220 0.27 +0.3
237,203 - CCNA_00220 0.29 +1.1
237,203 - CCNA_00220 0.29 +0.2
237,203 - CCNA_00220 0.29 +0.2
237,205 + CCNA_00220 0.29 +0.1
237,213 - CCNA_00220 0.30 +0.4
237,213 - CCNA_00220 0.30 +0.5
237,244 - CCNA_00220 0.35 +0.8
237,246 + CCNA_00220 0.36 -0.0
237,344 + CCNA_00220 0.52 +0.5
237,358 - CCNA_00220 0.54 +0.3
237,364 - CCNA_00220 0.55 +0.1
237,364 - CCNA_00220 0.55 +0.4
237,371 + CCNA_00220 0.56 -0.1
237,379 + CCNA_00220 0.58 -0.5
237,379 - CCNA_00220 0.58 -1.1
237,416 + CCNA_00220 0.64 -0.2
237,416 + CCNA_00220 0.64 -1.6
237,424 - CCNA_00220 0.65 +0.3
237,461 - CCNA_00220 0.71 -0.2
237,470 + CCNA_00220 0.73 +1.5
237,471 + CCNA_00220 0.73 +1.2
237,471 + CCNA_00220 0.73 -0.3
237,519 + CCNA_00220 0.81 -0.0
237,526 - CCNA_00220 0.82 -0.1
237,534 - CCNA_00220 0.83 +1.2
237,557 - CCNA_00220 0.87 +0.7
237,600 - +0.0
237,620 + -0.4
237,620 + -0.4
237,628 - +0.1
237,628 - +0.1
237,647 - +0.6
237,672 + +0.3
237,674 + -0.4
237,674 + -0.4
237,682 - +0.3
237,713 + CCNA_00221 0.14 -0.2
237,721 - CCNA_00221 0.16 +0.3
237,773 + CCNA_00221 0.26 +0.7
237,773 + CCNA_00221 0.26 -0.2
237,773 + CCNA_00221 0.26 +0.4
237,773 + CCNA_00221 0.26 -0.5
237,782 - CCNA_00221 0.28 +0.1
237,782 - CCNA_00221 0.28 -0.0
237,799 + CCNA_00221 0.32 +0.4
237,815 - CCNA_00221 0.35 -0.2
237,833 - CCNA_00221 0.39 +0.4
237,876 - CCNA_00221 0.47 -0.9
237,891 + CCNA_00221 0.50 -0.3
237,908 - CCNA_00221 0.54 +1.2
237,931 + CCNA_00221 0.58 -1.3
237,931 + CCNA_00221 0.58 +0.1
237,936 + CCNA_00221 0.59 -0.1
237,939 - CCNA_00221 0.60 +0.4
237,939 - CCNA_00221 0.60 +0.2
237,944 - CCNA_00221 0.61 -0.4
237,944 - CCNA_00221 0.61 +1.0
237,944 - CCNA_00221 0.61 +0.0
237,944 - CCNA_00221 0.61 +0.9
237,961 + CCNA_00221 0.64 -0.7
237,985 + CCNA_00221 0.69 -0.3
238,076 + CCNA_00221 0.88 -0.3
238,096 + +0.3
238,096 + +0.1
238,096 + +0.2
238,104 - +0.1
238,104 - +0.1
238,104 - +0.9
238,104 - -0.3
238,104 - +0.0
238,124 + -1.9
238,131 + -1.8
238,132 - +0.1
238,164 - -0.1
238,237 + +1.1
238,266 - +0.5

Or see this region's nucleotide sequence