Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00205

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00204 and CCNA_00205 are separated by 3 nucleotidesCCNA_00205 and CCNA_03916 overlap by 1 nucleotidesCCNA_03916 and CCNA_00206 overlap by 155 nucleotidesCCNA_00206 and CCNA_00207 overlap by 1 nucleotides CCNA_00204: CCNA_00204 - glutathione-regulated potassium-efflux system protein kefB, at 218,336 to 220,237 _00204 CCNA_00205: CCNA_00205 - NAD(P)H-quinone reductase, at 220,241 to 220,822 _00205 CCNA_03916: CCNA_03916 - hypothetical protein, at 220,822 to 221,085 _03916 CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 Position (kb) 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 219.284 kb on + strand, within CCNA_00204at 219.305 kb on + strand, within CCNA_00204at 219.306 kb on - strand, within CCNA_00204at 219.312 kb on - strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.320 kb on + strand, within CCNA_00204at 219.327 kb on + strand, within CCNA_00204at 219.328 kb on - strand, within CCNA_00204at 219.335 kb on - strand, within CCNA_00204at 219.402 kb on - strand, within CCNA_00204at 219.404 kb on - strand, within CCNA_00204at 219.441 kb on + strand, within CCNA_00204at 219.502 kb on + strand, within CCNA_00204at 219.502 kb on + strand, within CCNA_00204at 219.506 kb on - strand, within CCNA_00204at 219.512 kb on + strand, within CCNA_00204at 219.512 kb on + strand, within CCNA_00204at 219.520 kb on - strand, within CCNA_00204at 219.527 kb on + strand, within CCNA_00204at 219.530 kb on + strand, within CCNA_00204at 219.600 kb on + strand, within CCNA_00204at 219.635 kb on + strand, within CCNA_00204at 219.650 kb on + strand, within CCNA_00204at 219.650 kb on + strand, within CCNA_00204at 219.658 kb on - strand, within CCNA_00204at 219.703 kb on - strand, within CCNA_00204at 219.715 kb on + strand, within CCNA_00204at 219.777 kb on + strand, within CCNA_00204at 219.782 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.820 kb on + strand, within CCNA_00204at 219.822 kb on + strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.829 kb on - strand, within CCNA_00204at 219.843 kb on - strand, within CCNA_00204at 219.843 kb on - strand, within CCNA_00204at 219.867 kb on - strand, within CCNA_00204at 219.883 kb on + strand, within CCNA_00204at 219.886 kb on - strand, within CCNA_00204at 219.908 kb on + strand, within CCNA_00204at 219.911 kb on - strand, within CCNA_00204at 219.913 kb on + strand, within CCNA_00204at 219.915 kb on + strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.944 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.950 kb on - strand, within CCNA_00204at 219.961 kb on + strand, within CCNA_00204at 219.966 kb on + strand, within CCNA_00204at 219.966 kb on + strand, within CCNA_00204at 219.984 kb on - strand, within CCNA_00204at 219.984 kb on - strand, within CCNA_00204at 220.000 kb on - strand, within CCNA_00204at 220.016 kb on - strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.040 kb on + strand, within CCNA_00204at 220.040 kb on - strand, within CCNA_00204at 220.053 kb on + strandat 220.121 kb on - strandat 220.126 kb on - strandat 220.142 kb on + strandat 220.142 kb on + strandat 220.147 kb on + strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.153 kb on + strandat 220.155 kb on - strandat 220.158 kb on + strandat 220.158 kb on + strandat 220.166 kb on - strandat 220.183 kb on - strandat 220.195 kb on - strandat 220.198 kb on + strandat 220.217 kb on - strandat 220.229 kb on - strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.253 kb on - strandat 220.296 kb on + strandat 220.296 kb on + strandat 220.309 kb on + strand, within CCNA_00205at 220.314 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.327 kb on - strand, within CCNA_00205at 220.327 kb on - strand, within CCNA_00205at 220.364 kb on - strand, within CCNA_00205at 220.387 kb on + strand, within CCNA_00205at 220.387 kb on + strand, within CCNA_00205at 220.406 kb on + strand, within CCNA_00205at 220.446 kb on + strand, within CCNA_00205at 220.448 kb on - strand, within CCNA_00205at 220.455 kb on - strand, within CCNA_00205at 220.457 kb on + strand, within CCNA_00205at 220.491 kb on - strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.554 kb on + strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.578 kb on + strand, within CCNA_00205at 220.584 kb on - strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.603 kb on - strand, within CCNA_00205at 220.641 kb on - strand, within CCNA_00205at 220.703 kb on + strand, within CCNA_00205at 220.711 kb on - strand, within CCNA_00205at 220.726 kb on - strand, within CCNA_00205at 220.768 kb on - strandat 220.768 kb on - strandat 220.796 kb on + strandat 220.806 kb on + strandat 220.814 kb on - strandat 220.819 kb on + strandat 220.819 kb on + strandat 220.929 kb on - strand, within CCNA_03916at 220.942 kb on + strandat 220.943 kb on + strandat 220.958 kb on + strandat 220.958 kb on + strandat 220.966 kb on - strandat 220.966 kb on - strandat 220.966 kb on - strandat 221.053 kb on - strandat 221.067 kb on - strandat 221.074 kb on + strandat 221.075 kb on - strandat 221.109 kb on + strand, within CCNA_00206at 221.124 kb on - strand, within CCNA_00206at 221.160 kb on + strand, within CCNA_00206at 221.184 kb on - strand, within CCNA_00206at 221.194 kb on + strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.241 kb on + strand, within CCNA_00206at 221.245 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.324 kb on + strand, within CCNA_00206at 221.366 kb on - strand, within CCNA_00206at 221.410 kb on + strand, within CCNA_00206at 221.422 kb on + strand, within CCNA_00206at 221.488 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.583 kb on - strandat 221.644 kb on - strandat 221.652 kb on - strandat 221.704 kb on - strandat 221.717 kb on - strand, within CCNA_00207at 221.763 kb on - strand, within CCNA_00207at 221.770 kb on + strand, within CCNA_00207at 221.793 kb on + strand, within CCNA_00207at 221.816 kb on - strand, within CCNA_00207

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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219,284 + CCNA_00204 0.50 -0.1
219,305 + CCNA_00204 0.51 -0.8
219,306 - CCNA_00204 0.51 -1.9
219,312 - CCNA_00204 0.51 -1.4
219,320 + CCNA_00204 0.52 -0.3
219,320 + CCNA_00204 0.52 -0.9
219,320 + CCNA_00204 0.52 +0.1
219,320 + CCNA_00204 0.52 +0.2
219,320 + CCNA_00204 0.52 +0.4
219,327 + CCNA_00204 0.52 -0.5
219,328 - CCNA_00204 0.52 +0.1
219,335 - CCNA_00204 0.53 +0.3
219,402 - CCNA_00204 0.56 +0.5
219,404 - CCNA_00204 0.56 -0.8
219,441 + CCNA_00204 0.58 -0.5
219,502 + CCNA_00204 0.61 -0.6
219,502 + CCNA_00204 0.61 +0.3
219,506 - CCNA_00204 0.62 +0.1
219,512 + CCNA_00204 0.62 +1.5
219,512 + CCNA_00204 0.62 -0.8
219,520 - CCNA_00204 0.62 -0.2
219,527 + CCNA_00204 0.63 -0.5
219,530 + CCNA_00204 0.63 -0.2
219,600 + CCNA_00204 0.66 -0.2
219,635 + CCNA_00204 0.68 +0.0
219,650 + CCNA_00204 0.69 -0.2
219,650 + CCNA_00204 0.69 +0.3
219,658 - CCNA_00204 0.70 -0.7
219,703 - CCNA_00204 0.72 -0.3
219,715 + CCNA_00204 0.73 -2.4
219,777 + CCNA_00204 0.76 -0.5
219,782 + CCNA_00204 0.76 +0.7
219,820 + CCNA_00204 0.78 -0.6
219,820 + CCNA_00204 0.78 +0.3
219,820 + CCNA_00204 0.78 -0.3
219,820 + CCNA_00204 0.78 -0.6
219,820 + CCNA_00204 0.78 -1.6
219,822 + CCNA_00204 0.78 -0.8
219,822 - CCNA_00204 0.78 -0.2
219,822 - CCNA_00204 0.78 +1.3
219,828 - CCNA_00204 0.78 +0.1
219,828 - CCNA_00204 0.78 -0.0
219,828 - CCNA_00204 0.78 +0.4
219,828 - CCNA_00204 0.78 -0.6
219,829 - CCNA_00204 0.78 +1.4
219,843 - CCNA_00204 0.79 -0.6
219,843 - CCNA_00204 0.79 +0.9
219,867 - CCNA_00204 0.80 +0.9
219,883 + CCNA_00204 0.81 +1.2
219,886 - CCNA_00204 0.81 -0.3
219,908 + CCNA_00204 0.83 -0.6
219,911 - CCNA_00204 0.83 -0.0
219,913 + CCNA_00204 0.83 -0.9
219,915 + CCNA_00204 0.83 -0.5
219,921 - CCNA_00204 0.83 +1.2
219,921 - CCNA_00204 0.83 -0.3
219,921 - CCNA_00204 0.83 -0.3
219,921 - CCNA_00204 0.83 +0.3
219,941 + CCNA_00204 0.84 -0.3
219,941 + CCNA_00204 0.84 -1.3
219,941 + CCNA_00204 0.84 -0.9
219,941 + CCNA_00204 0.84 +0.3
219,941 + CCNA_00204 0.84 -0.7
219,941 + CCNA_00204 0.84 -1.3
219,941 + CCNA_00204 0.84 -1.7
219,941 + CCNA_00204 0.84 -0.2
219,941 + CCNA_00204 0.84 +0.1
219,941 + CCNA_00204 0.84 +0.5
219,941 + CCNA_00204 0.84 -0.8
219,941 + CCNA_00204 0.84 -1.1
219,941 + CCNA_00204 0.84 -0.3
219,944 - CCNA_00204 0.85 +1.2
219,949 - CCNA_00204 0.85 +0.6
219,949 - CCNA_00204 0.85 +0.9
219,949 - CCNA_00204 0.85 -0.8
219,949 - CCNA_00204 0.85 +0.1
219,949 - CCNA_00204 0.85 -0.0
219,949 - CCNA_00204 0.85 +0.5
219,949 - CCNA_00204 0.85 +2.7
219,949 - CCNA_00204 0.85 +0.3
219,949 - CCNA_00204 0.85 +0.6
219,949 - CCNA_00204 0.85 -1.0
219,949 - CCNA_00204 0.85 +0.4
219,950 - CCNA_00204 0.85 +0.9
219,961 + CCNA_00204 0.85 +0.2
219,966 + CCNA_00204 0.86 -1.0
219,966 + CCNA_00204 0.86 +0.1
219,984 - CCNA_00204 0.87 +0.4
219,984 - CCNA_00204 0.87 -1.1
220,000 - CCNA_00204 0.87 -1.0
220,016 - CCNA_00204 0.88 +0.8
220,021 + CCNA_00204 0.89 +0.1
220,021 + CCNA_00204 0.89 -1.0
220,021 + CCNA_00204 0.89 -0.2
220,021 + CCNA_00204 0.89 -0.4
220,021 + CCNA_00204 0.89 -0.9
220,021 + CCNA_00204 0.89 -0.3
220,021 + CCNA_00204 0.89 +0.8
220,021 + CCNA_00204 0.89 -1.4
220,021 + CCNA_00204 0.89 +0.0
220,021 + CCNA_00204 0.89 +0.2
220,029 - CCNA_00204 0.89 -0.3
220,029 - CCNA_00204 0.89 +1.7
220,029 - CCNA_00204 0.89 +0.2
220,029 - CCNA_00204 0.89 +0.2
220,029 - CCNA_00204 0.89 -0.3
220,040 + CCNA_00204 0.90 -1.1
220,040 - CCNA_00204 0.90 -0.5
220,053 + -1.8
220,121 - -0.6
220,126 - -0.1
220,142 + -0.3
220,142 + -0.6
220,147 + +0.3
220,150 - -0.3
220,150 - -1.1
220,150 - +0.0
220,150 - +0.3
220,150 - -0.7
220,153 + -0.4
220,155 - -1.3
220,158 + -0.1
220,158 + +1.9
220,166 - -0.3
220,183 - -0.2
220,195 - -0.2
220,198 + +0.2
220,217 - +0.1
220,229 - +0.1
220,239 + -1.2
220,239 + +0.1
220,239 + -0.3
220,239 + -0.6
220,239 + +0.7
220,239 + -0.5
220,239 + -0.4
220,247 - -1.4
220,247 - +0.4
220,247 - +0.4
220,247 - -0.6
220,247 - -0.2
220,247 - +0.7
220,253 - -0.5
220,296 + -0.2
220,296 + +1.7
220,309 + CCNA_00205 0.12 -0.8
220,314 + CCNA_00205 0.13 -0.1
220,319 + CCNA_00205 0.13 -0.4
220,319 + CCNA_00205 0.13 +0.8
220,319 + CCNA_00205 0.13 +0.5
220,320 + CCNA_00205 0.14 +1.8
220,320 + CCNA_00205 0.14 -0.7
220,327 - CCNA_00205 0.15 -0.7
220,327 - CCNA_00205 0.15 -0.1
220,364 - CCNA_00205 0.21 -0.2
220,387 + CCNA_00205 0.25 -0.9
220,387 + CCNA_00205 0.25 +1.9
220,406 + CCNA_00205 0.28 -0.8
220,446 + CCNA_00205 0.35 -0.6
220,448 - CCNA_00205 0.36 +0.7
220,455 - CCNA_00205 0.37 +0.1
220,457 + CCNA_00205 0.37 -1.1
220,491 - CCNA_00205 0.43 +0.4
220,493 + CCNA_00205 0.43 +0.7
220,501 - CCNA_00205 0.45 -0.6
220,501 - CCNA_00205 0.45 +0.3
220,501 - CCNA_00205 0.45 +0.3
220,541 - CCNA_00205 0.52 +0.1
220,546 - CCNA_00205 0.52 -1.5
220,554 + CCNA_00205 0.54 +0.8
220,562 - CCNA_00205 0.55 -0.8
220,578 + CCNA_00205 0.58 -0.3
220,584 - CCNA_00205 0.59 +0.5
220,595 + CCNA_00205 0.61 -0.6
220,595 + CCNA_00205 0.61 +1.1
220,603 - CCNA_00205 0.62 +0.4
220,641 - CCNA_00205 0.69 +0.0
220,703 + CCNA_00205 0.79 -0.6
220,711 - CCNA_00205 0.81 +0.3
220,726 - CCNA_00205 0.83 -0.3
220,768 - +0.0
220,768 - -1.6
220,796 + -0.7
220,806 + -1.2
220,814 - +0.4
220,819 + +0.7
220,819 + -0.1
220,929 - CCNA_03916 0.41 -1.0
220,942 + -0.1
220,943 + -2.2
220,958 + +0.0
220,958 + +0.5
220,966 - +0.0
220,966 - -0.4
220,966 - -1.1
221,053 - -0.2
221,067 - -1.3
221,074 + +0.9
221,075 - -0.7
221,109 + CCNA_00206 0.25 +0.0
221,124 - CCNA_00206 0.27 +0.8
221,160 + CCNA_00206 0.32 -0.0
221,184 - CCNA_00206 0.36 +0.7
221,194 + CCNA_00206 0.37 -0.5
221,202 - CCNA_00206 0.38 +0.7
221,202 - CCNA_00206 0.38 -1.2
221,202 - CCNA_00206 0.38 -0.5
221,241 + CCNA_00206 0.44 +0.8
221,245 + CCNA_00206 0.44 +0.0
221,300 + CCNA_00206 0.52 +0.3
221,300 + CCNA_00206 0.52 +0.1
221,323 + CCNA_00206 0.55 +0.5
221,323 + CCNA_00206 0.55 -0.2
221,323 + CCNA_00206 0.55 +0.7
221,324 + CCNA_00206 0.55 +0.2
221,366 - CCNA_00206 0.61 -0.3
221,410 + CCNA_00206 0.67 -0.3
221,422 + CCNA_00206 0.69 -0.4
221,488 - CCNA_00206 0.78 +0.3
221,575 + +0.3
221,575 + -1.2
221,583 - -1.7
221,644 - -0.7
221,652 - -0.4
221,704 - +0.9
221,717 - CCNA_00207 0.12 +1.9
221,763 - CCNA_00207 0.19 +0.3
221,770 + CCNA_00207 0.20 +0.4
221,793 + CCNA_00207 0.24 +0.0
221,816 - CCNA_00207 0.27 -1.0

Or see this region's nucleotide sequence