Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00143

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00141 and CCNA_00142 are separated by 1 nucleotidesCCNA_00142 and CCNA_00143 overlap by 1 nucleotidesCCNA_00143 and CCNA_00144 are separated by 34 nucleotides CCNA_00141: CCNA_00141 - tetratricopeptide repeat family protein, at 153,718 to 154,533 _00141 CCNA_00142: CCNA_00142 - endonuclease, at 154,535 to 154,912 _00142 CCNA_00143: CCNA_00143 - ribosomal RNA small subunit methyltransferase I, at 154,912 to 155,784 _00143 CCNA_00144: CCNA_00144 - oxygen-independent coproporphyrinogen-III oxidase, at 155,819 to 156,973 _00144 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.914 kb on + strand, within CCNA_00141at 153.922 kb on - strand, within CCNA_00141at 153.923 kb on - strand, within CCNA_00141at 153.975 kb on + strand, within CCNA_00141at 153.991 kb on + strand, within CCNA_00141at 154.040 kb on + strand, within CCNA_00141at 154.041 kb on - strand, within CCNA_00141at 154.050 kb on + strand, within CCNA_00141at 154.091 kb on + strand, within CCNA_00141at 154.109 kb on - strand, within CCNA_00141at 154.127 kb on + strand, within CCNA_00141at 154.149 kb on + strand, within CCNA_00141at 154.166 kb on + strand, within CCNA_00141at 154.179 kb on + strand, within CCNA_00141at 154.181 kb on - strand, within CCNA_00141at 154.211 kb on - strand, within CCNA_00141at 154.211 kb on - strand, within CCNA_00141at 154.278 kb on + strand, within CCNA_00141at 154.278 kb on + strand, within CCNA_00141at 154.278 kb on + strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.355 kb on + strand, within CCNA_00141at 154.359 kb on - strand, within CCNA_00141at 154.393 kb on + strand, within CCNA_00141at 154.409 kb on + strand, within CCNA_00141at 154.421 kb on + strand, within CCNA_00141at 154.432 kb on + strand, within CCNA_00141at 154.440 kb on - strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.457 kb on + strandat 154.482 kb on - strandat 154.521 kb on + strandat 154.532 kb on + strandat 154.552 kb on + strandat 154.577 kb on + strand, within CCNA_00142at 154.587 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.632 kb on - strand, within CCNA_00142at 154.672 kb on + strand, within CCNA_00142at 154.681 kb on - strand, within CCNA_00142at 154.684 kb on + strand, within CCNA_00142at 154.685 kb on - strand, within CCNA_00142at 154.739 kb on + strand, within CCNA_00142at 154.739 kb on + strand, within CCNA_00142at 154.739 kb on + strand, within CCNA_00142at 154.747 kb on - strand, within CCNA_00142at 154.793 kb on - strand, within CCNA_00142at 154.826 kb on - strand, within CCNA_00142at 154.842 kb on + strand, within CCNA_00142at 154.850 kb on - strand, within CCNA_00142at 154.931 kb on - strandat 155.007 kb on - strand, within CCNA_00143at 155.012 kb on - strand, within CCNA_00143at 155.029 kb on - strand, within CCNA_00143at 155.093 kb on - strand, within CCNA_00143at 155.168 kb on + strand, within CCNA_00143at 155.178 kb on + strand, within CCNA_00143at 155.183 kb on + strand, within CCNA_00143at 155.188 kb on + strand, within CCNA_00143at 155.219 kb on + strand, within CCNA_00143at 155.279 kb on + strand, within CCNA_00143at 155.279 kb on + strand, within CCNA_00143at 155.306 kb on - strand, within CCNA_00143at 155.308 kb on + strand, within CCNA_00143at 155.308 kb on + strand, within CCNA_00143at 155.316 kb on - strand, within CCNA_00143at 155.316 kb on - strand, within CCNA_00143at 155.324 kb on + strand, within CCNA_00143at 155.379 kb on + strand, within CCNA_00143at 155.380 kb on + strand, within CCNA_00143at 155.380 kb on + strand, within CCNA_00143at 155.387 kb on - strand, within CCNA_00143at 155.387 kb on - strand, within CCNA_00143at 155.419 kb on - strand, within CCNA_00143at 155.424 kb on + strand, within CCNA_00143at 155.424 kb on + strand, within CCNA_00143at 155.468 kb on + strand, within CCNA_00143at 155.478 kb on + strand, within CCNA_00143at 155.503 kb on - strand, within CCNA_00143at 155.598 kb on - strand, within CCNA_00143at 155.678 kb on - strand, within CCNA_00143at 155.685 kb on + strand, within CCNA_00143at 155.685 kb on + strand, within CCNA_00143at 155.693 kb on - strand, within CCNA_00143at 155.693 kb on - strand, within CCNA_00143at 155.726 kb on - strandat 155.732 kb on - strandat 155.735 kb on + strandat 155.752 kb on + strandat 155.765 kb on - strandat 155.779 kb on + strandat 155.785 kb on - strandat 155.786 kb on + strandat 155.794 kb on - strandat 155.807 kb on + strandat 155.814 kb on - strandat 155.815 kb on - strandat 155.846 kb on + strandat 155.846 kb on + strandat 155.859 kb on - strandat 155.869 kb on - strandat 155.874 kb on + strandat 155.874 kb on + strandat 155.874 kb on + strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.910 kb on + strandat 155.910 kb on + strandat 155.921 kb on + strandat 155.922 kb on + strandat 155.929 kb on + strandat 155.929 kb on + strandat 155.929 kb on + strandat 155.930 kb on - strandat 155.937 kb on - strand, within CCNA_00144at 155.949 kb on + strand, within CCNA_00144at 155.952 kb on - strand, within CCNA_00144at 155.952 kb on - strand, within CCNA_00144at 155.957 kb on - strand, within CCNA_00144at 155.959 kb on - strand, within CCNA_00144at 155.959 kb on - strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 156.000 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.033 kb on + strand, within CCNA_00144at 156.175 kb on + strand, within CCNA_00144at 156.198 kb on + strand, within CCNA_00144at 156.198 kb on + strand, within CCNA_00144at 156.236 kb on + strand, within CCNA_00144at 156.244 kb on - strand, within CCNA_00144at 156.252 kb on - strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.296 kb on - strand, within CCNA_00144at 156.296 kb on - strand, within CCNA_00144at 156.353 kb on + strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.398 kb on - strand, within CCNA_00144at 156.407 kb on + strand, within CCNA_00144at 156.408 kb on - strand, within CCNA_00144at 156.408 kb on - strand, within CCNA_00144at 156.415 kb on - strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.475 kb on - strand, within CCNA_00144at 156.481 kb on - strand, within CCNA_00144at 156.490 kb on + strand, within CCNA_00144at 156.523 kb on - strand, within CCNA_00144at 156.540 kb on + strand, within CCNA_00144at 156.554 kb on + strand, within CCNA_00144at 156.554 kb on + strand, within CCNA_00144at 156.571 kb on + strand, within CCNA_00144at 156.605 kb on + strand, within CCNA_00144at 156.675 kb on - strand, within CCNA_00144at 156.675 kb on - strand, within CCNA_00144at 156.675 kb on - strand, within CCNA_00144at 156.675 kb on - strand, within CCNA_00144at 156.685 kb on - strand, within CCNA_00144at 156.744 kb on + strand, within CCNA_00144

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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153,914 + CCNA_00141 0.24 +0.4
153,922 - CCNA_00141 0.25 +0.5
153,923 - CCNA_00141 0.25 -0.1
153,975 + CCNA_00141 0.31 +0.3
153,991 + CCNA_00141 0.33 +0.6
154,040 + CCNA_00141 0.39 -0.5
154,041 - CCNA_00141 0.40 +0.2
154,050 + CCNA_00141 0.41 +0.5
154,091 + CCNA_00141 0.46 -0.6
154,109 - CCNA_00141 0.48 -0.1
154,127 + CCNA_00141 0.50 +0.1
154,149 + CCNA_00141 0.53 -0.5
154,166 + CCNA_00141 0.55 +0.2
154,179 + CCNA_00141 0.56 -0.1
154,181 - CCNA_00141 0.57 +0.2
154,211 - CCNA_00141 0.60 +0.4
154,211 - CCNA_00141 0.60 +0.2
154,278 + CCNA_00141 0.69 -0.5
154,278 + CCNA_00141 0.69 +0.5
154,278 + CCNA_00141 0.69 -0.2
154,286 - CCNA_00141 0.70 +0.6
154,286 - CCNA_00141 0.70 -1.0
154,286 - CCNA_00141 0.70 +0.6
154,286 - CCNA_00141 0.70 +0.1
154,355 + CCNA_00141 0.78 -1.3
154,359 - CCNA_00141 0.79 -0.0
154,393 + CCNA_00141 0.83 -0.7
154,409 + CCNA_00141 0.85 +0.1
154,421 + CCNA_00141 0.86 +0.5
154,432 + CCNA_00141 0.88 -0.2
154,440 - CCNA_00141 0.88 +0.2
154,442 + CCNA_00141 0.89 -0.3
154,442 + CCNA_00141 0.89 -0.2
154,442 + CCNA_00141 0.89 -0.8
154,442 + CCNA_00141 0.89 -0.2
154,442 + CCNA_00141 0.89 -1.0
154,442 + CCNA_00141 0.89 +0.7
154,442 + CCNA_00141 0.89 +0.1
154,447 + CCNA_00141 0.89 -0.2
154,447 + CCNA_00141 0.89 +0.0
154,447 + CCNA_00141 0.89 +0.5
154,447 + CCNA_00141 0.89 -0.4
154,447 + CCNA_00141 0.89 -0.6
154,450 - CCNA_00141 0.90 -0.1
154,450 - CCNA_00141 0.90 +0.5
154,450 - CCNA_00141 0.90 +0.4
154,450 - CCNA_00141 0.90 +0.1
154,450 - CCNA_00141 0.90 -1.1
154,455 - +0.1
154,455 - -0.1
154,455 - +0.1
154,455 - -0.2
154,457 + -0.2
154,482 - -0.2
154,521 + -1.2
154,532 + +0.4
154,552 + +0.3
154,577 + CCNA_00142 0.11 -0.3
154,587 + CCNA_00142 0.14 +0.0
154,624 + CCNA_00142 0.24 -0.0
154,624 + CCNA_00142 0.24 -0.0
154,624 + CCNA_00142 0.24 -0.4
154,624 + CCNA_00142 0.24 +0.3
154,632 - CCNA_00142 0.26 +0.4
154,672 + CCNA_00142 0.36 -0.2
154,681 - CCNA_00142 0.39 +0.0
154,684 + CCNA_00142 0.39 -0.4
154,685 - CCNA_00142 0.40 -0.3
154,739 + CCNA_00142 0.54 +0.2
154,739 + CCNA_00142 0.54 -1.0
154,739 + CCNA_00142 0.54 -0.3
154,747 - CCNA_00142 0.56 +0.2
154,793 - CCNA_00142 0.68 +0.2
154,826 - CCNA_00142 0.77 +0.3
154,842 + CCNA_00142 0.81 -0.6
154,850 - CCNA_00142 0.83 -0.3
154,931 - +0.1
155,007 - CCNA_00143 0.11 -0.6
155,012 - CCNA_00143 0.11 -0.1
155,029 - CCNA_00143 0.13 -1.8
155,093 - CCNA_00143 0.21 -0.5
155,168 + CCNA_00143 0.29 -2.0
155,178 + CCNA_00143 0.30 +0.6
155,183 + CCNA_00143 0.31 +0.6
155,188 + CCNA_00143 0.32 +0.6
155,219 + CCNA_00143 0.35 -2.0
155,279 + CCNA_00143 0.42 -2.1
155,279 + CCNA_00143 0.42 -1.2
155,306 - CCNA_00143 0.45 +1.0
155,308 + CCNA_00143 0.45 -1.0
155,308 + CCNA_00143 0.45 -1.6
155,316 - CCNA_00143 0.46 -0.2
155,316 - CCNA_00143 0.46 -1.7
155,324 + CCNA_00143 0.47 -0.2
155,379 + CCNA_00143 0.53 +0.8
155,380 + CCNA_00143 0.54 -0.5
155,380 + CCNA_00143 0.54 -1.0
155,387 - CCNA_00143 0.54 +0.3
155,387 - CCNA_00143 0.54 -0.1
155,419 - CCNA_00143 0.58 -0.7
155,424 + CCNA_00143 0.59 -1.3
155,424 + CCNA_00143 0.59 -1.5
155,468 + CCNA_00143 0.64 -1.8
155,478 + CCNA_00143 0.65 -0.5
155,503 - CCNA_00143 0.68 +0.6
155,598 - CCNA_00143 0.79 +0.7
155,678 - CCNA_00143 0.88 -0.3
155,685 + CCNA_00143 0.89 -1.5
155,685 + CCNA_00143 0.89 -1.5
155,693 - CCNA_00143 0.89 -0.1
155,693 - CCNA_00143 0.89 -0.1
155,726 - +0.1
155,732 - -1.0
155,735 + -0.4
155,752 + +1.1
155,765 - +0.7
155,779 + -0.5
155,785 - +0.0
155,786 + -1.1
155,794 - -0.0
155,807 + +2.3
155,814 - -0.9
155,815 - -0.4
155,846 + -0.6
155,846 + -0.2
155,859 - -0.1
155,869 - +0.3
155,874 + +0.7
155,874 + +0.1
155,874 + -0.5
155,882 - +0.0
155,882 - +0.0
155,882 - +0.5
155,882 - +0.7
155,882 - +0.5
155,910 + -0.5
155,910 + +0.9
155,921 + +0.2
155,922 + -0.2
155,929 + -0.1
155,929 + -0.4
155,929 + -0.2
155,930 - -0.1
155,937 - CCNA_00144 0.10 +0.3
155,949 + CCNA_00144 0.11 -0.2
155,952 - CCNA_00144 0.12 +0.0
155,952 - CCNA_00144 0.12 +0.6
155,957 - CCNA_00144 0.12 +0.4
155,959 - CCNA_00144 0.12 -0.4
155,959 - CCNA_00144 0.12 +0.2
155,968 + CCNA_00144 0.13 +0.0
155,968 + CCNA_00144 0.13 +2.0
155,968 + CCNA_00144 0.13 +0.1
155,968 + CCNA_00144 0.13 +0.1
155,976 - CCNA_00144 0.14 +0.6
155,976 - CCNA_00144 0.14 -0.1
155,976 - CCNA_00144 0.14 +0.0
155,976 - CCNA_00144 0.14 +0.3
155,976 - CCNA_00144 0.14 -0.3
156,000 + CCNA_00144 0.16 +0.1
156,014 + CCNA_00144 0.17 -0.2
156,014 + CCNA_00144 0.17 -0.1
156,014 + CCNA_00144 0.17 +0.1
156,014 + CCNA_00144 0.17 +0.9
156,014 + CCNA_00144 0.17 +0.1
156,022 - CCNA_00144 0.18 +0.0
156,022 - CCNA_00144 0.18 -0.0
156,022 - CCNA_00144 0.18 +0.6
156,022 - CCNA_00144 0.18 +0.4
156,022 - CCNA_00144 0.18 -0.1
156,033 + CCNA_00144 0.19 +0.3
156,175 + CCNA_00144 0.31 +1.5
156,198 + CCNA_00144 0.33 +0.4
156,198 + CCNA_00144 0.33 +0.7
156,236 + CCNA_00144 0.36 +0.0
156,244 - CCNA_00144 0.37 +0.5
156,252 - CCNA_00144 0.37 -0.1
156,288 + CCNA_00144 0.41 +1.2
156,288 + CCNA_00144 0.41 +0.3
156,288 + CCNA_00144 0.41 +0.1
156,288 + CCNA_00144 0.41 +0.1
156,288 + CCNA_00144 0.41 -0.9
156,296 - CCNA_00144 0.41 -0.2
156,296 - CCNA_00144 0.41 -0.5
156,353 + CCNA_00144 0.46 +0.2
156,361 - CCNA_00144 0.47 -0.1
156,361 - CCNA_00144 0.47 -0.0
156,361 - CCNA_00144 0.47 +0.7
156,390 + CCNA_00144 0.49 -0.1
156,390 + CCNA_00144 0.49 +0.0
156,390 + CCNA_00144 0.49 -0.0
156,398 - CCNA_00144 0.50 +0.1
156,407 + CCNA_00144 0.51 +0.5
156,408 - CCNA_00144 0.51 -0.5
156,408 - CCNA_00144 0.51 -0.4
156,415 - CCNA_00144 0.52 +0.2
156,468 + CCNA_00144 0.56 +0.6
156,475 - CCNA_00144 0.57 +0.1
156,481 - CCNA_00144 0.57 +0.1
156,490 + CCNA_00144 0.58 +0.5
156,523 - CCNA_00144 0.61 -0.5
156,540 + CCNA_00144 0.62 -1.1
156,554 + CCNA_00144 0.64 -0.1
156,554 + CCNA_00144 0.64 +0.2
156,571 + CCNA_00144 0.65 +0.1
156,605 + CCNA_00144 0.68 -0.9
156,675 - CCNA_00144 0.74 +0.0
156,675 - CCNA_00144 0.74 +0.8
156,675 - CCNA_00144 0.74 -0.5
156,675 - CCNA_00144 0.74 +0.1
156,685 - CCNA_00144 0.75 -0.0
156,744 + CCNA_00144 0.80 -0.0

Or see this region's nucleotide sequence