Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00036

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00034 and CCNA_00035 are separated by 14 nucleotidesCCNA_00035 and CCNA_00036 are separated by 2 nucleotidesCCNA_00036 and CCNA_00037 are separated by 100 nucleotidesCCNA_00037 and CCNA_00038 are separated by 59 nucleotides CCNA_00034: CCNA_00034 - SSU ribosomal protein S15P, at 38,211 to 38,480 _00034 CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427 _00035 CCNA_00036: CCNA_00036 - ribosome-binding factor A, at 39,430 to 39,879 _00036 CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 CCNA_00038: CCNA_00038 - hypothetical protein, at 40,828 to 41,403 _00038 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 38.823 kb on - strand, within CCNA_00035at 38.858 kb on - strand, within CCNA_00035at 38.867 kb on - strand, within CCNA_00035at 38.870 kb on + strand, within CCNA_00035at 38.892 kb on + strand, within CCNA_00035at 38.900 kb on - strand, within CCNA_00035at 38.942 kb on - strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.017 kb on + strand, within CCNA_00035at 39.025 kb on - strand, within CCNA_00035at 39.115 kb on - strand, within CCNA_00035at 39.117 kb on + strand, within CCNA_00035at 39.127 kb on - strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.171 kb on + strand, within CCNA_00035at 39.182 kb on - strand, within CCNA_00035at 39.208 kb on - strand, within CCNA_00035at 39.214 kb on - strand, within CCNA_00035at 39.230 kb on - strand, within CCNA_00035at 39.281 kb on - strand, within CCNA_00035at 39.281 kb on - strand, within CCNA_00035at 39.341 kb on + strandat 39.354 kb on + strandat 39.364 kb on + strandat 39.377 kb on + strandat 39.380 kb on - strandat 39.386 kb on + strandat 39.390 kb on - strandat 39.400 kb on - strandat 39.423 kb on + strandat 39.441 kb on - strandat 39.441 kb on - strandat 39.473 kb on - strandat 39.522 kb on - strand, within CCNA_00036at 39.641 kb on + strand, within CCNA_00036at 39.668 kb on - strand, within CCNA_00036at 39.710 kb on - strand, within CCNA_00036at 39.753 kb on - strand, within CCNA_00036at 39.859 kb on - strandat 39.896 kb on - strandat 39.919 kb on + strandat 39.948 kb on + strandat 39.950 kb on + strandat 39.950 kb on + strandat 39.950 kb on + strandat 39.956 kb on - strandat 39.958 kb on - strandat 39.978 kb on + strandat 39.978 kb on + strandat 39.985 kb on + strandat 39.986 kb on - strandat 40.004 kb on - strandat 40.041 kb on - strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.048 kb on + strandat 40.051 kb on - strandat 40.056 kb on - strandat 40.062 kb on - strand, within CCNA_00037at 40.070 kb on + strand, within CCNA_00037at 40.070 kb on + strand, within CCNA_00037at 40.071 kb on - strand, within CCNA_00037at 40.082 kb on + strand, within CCNA_00037at 40.083 kb on - strand, within CCNA_00037at 40.083 kb on - strand, within CCNA_00037at 40.088 kb on - strand, within CCNA_00037at 40.088 kb on - strand, within CCNA_00037at 40.089 kb on + strand, within CCNA_00037at 40.110 kb on + strand, within CCNA_00037at 40.126 kb on + strand, within CCNA_00037at 40.134 kb on - strand, within CCNA_00037at 40.142 kb on - strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.166 kb on - strand, within CCNA_00037at 40.166 kb on - strand, within CCNA_00037at 40.166 kb on - strand, within CCNA_00037at 40.184 kb on + strand, within CCNA_00037at 40.195 kb on + strand, within CCNA_00037at 40.244 kb on - strand, within CCNA_00037at 40.244 kb on - strand, within CCNA_00037at 40.275 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.316 kb on - strand, within CCNA_00037at 40.319 kb on + strand, within CCNA_00037at 40.397 kb on + strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.431 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.542 kb on - strand, within CCNA_00037at 40.557 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.643 kb on - strand, within CCNA_00037at 40.683 kb on + strand, within CCNA_00037at 40.745 kb on + strandat 40.795 kb on + strandat 40.796 kb on + strandat 40.802 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.838 kb on - strandat 40.839 kb on + strandat 40.839 kb on + strandat 40.849 kb on - strandat 40.849 kb on - strandat 40.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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38,823 - CCNA_00035 0.35 -0.1
38,858 - CCNA_00035 0.39 +0.6
38,867 - CCNA_00035 0.40 +0.5
38,870 + CCNA_00035 0.40 -2.0
38,892 + CCNA_00035 0.43 -0.2
38,900 - CCNA_00035 0.43 +0.3
38,942 - CCNA_00035 0.48 +0.7
39,016 + CCNA_00035 0.56 +0.1
39,016 + CCNA_00035 0.56 -0.2
39,017 + CCNA_00035 0.56 -0.3
39,025 - CCNA_00035 0.57 +0.2
39,115 - CCNA_00035 0.66 +0.5
39,117 + CCNA_00035 0.67 -0.1
39,127 - CCNA_00035 0.68 +1.9
39,130 + CCNA_00035 0.68 -0.3
39,138 - CCNA_00035 0.69 +0.1
39,138 - CCNA_00035 0.69 +0.6
39,138 - CCNA_00035 0.69 +0.2
39,138 - CCNA_00035 0.69 +0.5
39,171 + CCNA_00035 0.72 +0.1
39,182 - CCNA_00035 0.74 +2.1
39,208 - CCNA_00035 0.76 +0.2
39,214 - CCNA_00035 0.77 +1.2
39,230 - CCNA_00035 0.79 +1.2
39,281 - CCNA_00035 0.84 -0.2
39,281 - CCNA_00035 0.84 +0.6
39,341 + +0.5
39,354 + +0.0
39,364 + +0.2
39,377 + -0.2
39,380 - +1.1
39,386 + +0.6
39,390 - +0.8
39,400 - +0.5
39,423 + +0.2
39,441 - +0.7
39,441 - +1.2
39,473 - +0.8
39,522 - CCNA_00036 0.20 -0.2
39,641 + CCNA_00036 0.47 -0.7
39,668 - CCNA_00036 0.53 +0.5
39,710 - CCNA_00036 0.62 +0.3
39,753 - CCNA_00036 0.72 +0.0
39,859 - -0.1
39,896 - +0.3
39,919 + -1.3
39,948 + +0.5
39,950 + -1.1
39,950 + +0.1
39,950 + +0.3
39,956 - +0.2
39,958 - +0.1
39,978 + +0.0
39,978 + +0.8
39,985 + -0.1
39,986 - +0.0
40,004 - +0.6
40,041 - +0.0
40,043 + -0.0
40,043 + +0.4
40,043 + -0.1
40,048 + +0.4
40,051 - -1.2
40,056 - +0.9
40,062 - CCNA_00037 0.10 -0.4
40,070 + CCNA_00037 0.11 -0.2
40,070 + CCNA_00037 0.11 -1.0
40,071 - CCNA_00037 0.12 -0.3
40,082 + CCNA_00037 0.13 -0.0
40,083 - CCNA_00037 0.13 -0.2
40,083 - CCNA_00037 0.13 +0.3
40,088 - CCNA_00037 0.14 -2.0
40,088 - CCNA_00037 0.14 +0.0
40,089 + CCNA_00037 0.14 +1.6
40,110 + CCNA_00037 0.16 +0.4
40,126 + CCNA_00037 0.19 -1.2
40,134 - CCNA_00037 0.20 -1.0
40,142 - CCNA_00037 0.21 +1.0
40,158 + CCNA_00037 0.23 -0.2
40,166 - CCNA_00037 0.24 +0.9
40,166 - CCNA_00037 0.24 +0.9
40,166 - CCNA_00037 0.24 -0.4
40,184 + CCNA_00037 0.26 +1.4
40,195 + CCNA_00037 0.27 -1.5
40,244 - CCNA_00037 0.33 -0.1
40,244 - CCNA_00037 0.33 +1.1
40,275 + CCNA_00037 0.37 +0.1
40,280 + CCNA_00037 0.38 +0.4
40,280 + CCNA_00037 0.38 -1.2
40,288 - CCNA_00037 0.39 -0.3
40,288 - CCNA_00037 0.39 -0.9
40,288 - CCNA_00037 0.39 +0.8
40,316 - CCNA_00037 0.43 +0.8
40,319 + CCNA_00037 0.43 -0.6
40,397 + CCNA_00037 0.53 +0.2
40,422 + CCNA_00037 0.56 -0.6
40,430 - CCNA_00037 0.57 +0.3
40,430 - CCNA_00037 0.57 -0.4
40,431 + CCNA_00037 0.57 +0.8
40,465 + CCNA_00037 0.61 -0.9
40,465 + CCNA_00037 0.61 +0.1
40,542 - CCNA_00037 0.71 +1.2
40,557 + CCNA_00037 0.73 -0.4
40,625 + CCNA_00037 0.82 -1.3
40,625 + CCNA_00037 0.82 +0.1
40,633 - CCNA_00037 0.83 +0.6
40,633 - CCNA_00037 0.83 +0.6
40,633 - CCNA_00037 0.83 +0.6
40,633 - CCNA_00037 0.83 +0.8
40,643 - CCNA_00037 0.84 +0.2
40,683 + CCNA_00037 0.89 -0.1
40,745 + -0.8
40,795 + -0.8
40,796 + +0.3
40,802 - +0.1
40,803 - +0.7
40,803 - +0.1
40,803 - +0.4
40,803 - +1.4
40,803 - -0.7
40,803 - +0.8
40,803 - +0.6
40,838 - -0.3
40,839 + +1.0
40,839 + +0.2
40,849 - +0.0
40,849 - +0.5
40,859 - +0.3

Or see this region's nucleotide sequence