Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30180 and ABIE40_RS30185 are separated by 1 nucleotides ABIE40_RS30185 and ABIE40_RS30190 are separated by 653 nucleotides
ABIE40_RS30180: ABIE40_RS30180 - DNA repair exonuclease, at 723,590 to 724,855
_RS30180
ABIE40_RS30185: ABIE40_RS30185 - AAA family ATPase, at 724,857 to 728,363
_RS30185
ABIE40_RS30190: ABIE40_RS30190 - hypothetical protein, at 729,017 to 729,394
_RS30190
Position (kb) 724
725
726
727
728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 724.087 kb on + strand, within ABIE40_RS30180 at 724.087 kb on + strand, within ABIE40_RS30180 at 724.087 kb on + strand, within ABIE40_RS30180 at 724.166 kb on + strand, within ABIE40_RS30180 at 724.479 kb on + strand, within ABIE40_RS30180 at 724.479 kb on + strand, within ABIE40_RS30180 at 724.479 kb on + strand, within ABIE40_RS30180 at 724.479 kb on + strand, within ABIE40_RS30180 at 724.567 kb on + strand, within ABIE40_RS30180 at 724.775 kb on + strand at 724.959 kb on + strand at 724.960 kb on - strand at 725.058 kb on + strand at 725.058 kb on + strand at 725.058 kb on + strand at 725.058 kb on + strand at 725.059 kb on - strand at 725.382 kb on - strand, within ABIE40_RS30185 at 725.386 kb on + strand, within ABIE40_RS30185 at 725.387 kb on - strand, within ABIE40_RS30185 at 725.439 kb on - strand, within ABIE40_RS30185 at 725.574 kb on - strand, within ABIE40_RS30185 at 725.620 kb on - strand, within ABIE40_RS30185 at 725.827 kb on + strand, within ABIE40_RS30185 at 725.847 kb on + strand, within ABIE40_RS30185 at 725.847 kb on + strand, within ABIE40_RS30185 at 725.847 kb on + strand, within ABIE40_RS30185 at 725.847 kb on + strand, within ABIE40_RS30185 at 725.847 kb on + strand, within ABIE40_RS30185 at 725.848 kb on - strand, within ABIE40_RS30185 at 725.848 kb on - strand, within ABIE40_RS30185 at 726.094 kb on - strand, within ABIE40_RS30185 at 726.111 kb on + strand, within ABIE40_RS30185 at 726.111 kb on + strand, within ABIE40_RS30185 at 726.149 kb on - strand, within ABIE40_RS30185 at 726.342 kb on + strand, within ABIE40_RS30185 at 726.342 kb on + strand, within ABIE40_RS30185 at 726.342 kb on + strand, within ABIE40_RS30185 at 726.343 kb on - strand, within ABIE40_RS30185 at 726.389 kb on + strand, within ABIE40_RS30185 at 726.389 kb on + strand, within ABIE40_RS30185 at 726.390 kb on - strand, within ABIE40_RS30185 at 726.390 kb on - strand, within ABIE40_RS30185 at 726.508 kb on + strand, within ABIE40_RS30185 at 726.508 kb on + strand, within ABIE40_RS30185 at 726.508 kb on + strand, within ABIE40_RS30185 at 726.508 kb on + strand, within ABIE40_RS30185 at 726.508 kb on + strand, within ABIE40_RS30185 at 726.509 kb on - strand, within ABIE40_RS30185 at 726.509 kb on - strand, within ABIE40_RS30185 at 726.901 kb on + strand, within ABIE40_RS30185 at 726.902 kb on - strand, within ABIE40_RS30185 at 726.929 kb on + strand, within ABIE40_RS30185 at 727.104 kb on - strand, within ABIE40_RS30185 at 727.104 kb on - strand, within ABIE40_RS30185 at 727.117 kb on + strand, within ABIE40_RS30185 at 727.117 kb on + strand, within ABIE40_RS30185 at 727.117 kb on + strand, within ABIE40_RS30185 at 727.183 kb on + strand, within ABIE40_RS30185 at 727.183 kb on + strand, within ABIE40_RS30185 at 727.184 kb on - strand, within ABIE40_RS30185 at 727.235 kb on - strand, within ABIE40_RS30185 at 727.235 kb on - strand, within ABIE40_RS30185 at 727.268 kb on + strand, within ABIE40_RS30185 at 727.269 kb on - strand, within ABIE40_RS30185 at 727.337 kb on + strand, within ABIE40_RS30185 at 727.337 kb on + strand, within ABIE40_RS30185 at 727.337 kb on + strand, within ABIE40_RS30185 at 727.851 kb on + strand, within ABIE40_RS30185 at 727.851 kb on + strand, within ABIE40_RS30185 at 727.851 kb on + strand, within ABIE40_RS30185 at 727.851 kb on + strand, within ABIE40_RS30185 at 727.851 kb on + strand, within ABIE40_RS30185 at 727.852 kb on - strand, within ABIE40_RS30185 at 727.871 kb on + strand, within ABIE40_RS30185 at 727.902 kb on + strand, within ABIE40_RS30185 at 727.903 kb on - strand, within ABIE40_RS30185 at 727.985 kb on - strand, within ABIE40_RS30185 at 728.089 kb on - strand at 728.244 kb on + strand at 728.245 kb on - strand at 728.266 kb on + strand at 728.271 kb on + strand at 728.306 kb on - strand at 728.306 kb on - strand at 728.306 kb on - strand at 728.351 kb on - strand at 728.361 kb on + strand at 728.362 kb on - strand at 728.366 kb on + strand at 728.366 kb on + strand at 728.367 kb on - strand at 728.368 kb on + strand at 728.368 kb on + strand at 728.368 kb on + strand at 728.368 kb on + strand at 728.369 kb on - strand at 728.369 kb on - strand at 728.379 kb on - strand at 728.447 kb on + strand at 728.448 kb on - strand at 728.448 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.543 kb on - strand at 728.547 kb on - strand at 728.547 kb on - strand at 728.547 kb on - strand at 728.547 kb on - strand at 728.686 kb on - strand at 728.699 kb on - strand at 728.754 kb on + strand at 728.754 kb on + strand at 728.754 kb on + strand at 728.754 kb on + strand at 728.754 kb on + strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.755 kb on - strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.806 kb on - strand at 728.806 kb on - strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.809 kb on + strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.810 kb on - strand at 728.853 kb on - strand at 728.986 kb on + strand at 728.986 kb on + strand at 728.986 kb on + strand at 728.986 kb on + strand at 728.986 kb on + strand at 728.987 kb on - strand at 728.987 kb on - strand at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.093 kb on + strand, within ABIE40_RS30190 at 729.094 kb on - strand, within ABIE40_RS30190 at 729.094 kb on - strand, within ABIE40_RS30190 at 729.094 kb on - strand, within ABIE40_RS30190 at 729.094 kb on - strand, within ABIE40_RS30190 at 729.094 kb on - strand, within ABIE40_RS30190 at 729.095 kb on + strand, within ABIE40_RS30190 at 729.095 kb on + strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.096 kb on - strand, within ABIE40_RS30190 at 729.211 kb on + strand, within ABIE40_RS30190 at 729.211 kb on + strand, within ABIE40_RS30190 at 729.212 kb on - strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.271 kb on + strand, within ABIE40_RS30190 at 729.272 kb on - strand, within ABIE40_RS30190 at 729.272 kb on - strand, within ABIE40_RS30190 at 729.272 kb on - strand, within ABIE40_RS30190 at 729.272 kb on - strand, within ABIE40_RS30190
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 724,087 + ABIE40_RS30180 0.39 -1.2 724,087 + ABIE40_RS30180 0.39 +0.9 724,087 + ABIE40_RS30180 0.39 +0.4 724,166 + ABIE40_RS30180 0.45 -0.8 724,479 + ABIE40_RS30180 0.70 +0.3 724,479 + ABIE40_RS30180 0.70 +3.9 724,479 + ABIE40_RS30180 0.70 +0.6 724,479 + ABIE40_RS30180 0.70 -0.4 724,567 + ABIE40_RS30180 0.77 +1.4 724,775 + -0.3 724,959 + -1.1 724,960 - +0.2 725,058 + -1.2 725,058 + -1.7 725,058 + +0.6 725,058 + +0.5 725,059 - -1.0 725,382 - ABIE40_RS30185 0.15 -0.1 725,386 + ABIE40_RS30185 0.15 -0.6 725,387 - ABIE40_RS30185 0.15 +0.1 725,439 - ABIE40_RS30185 0.17 -0.3 725,574 - ABIE40_RS30185 0.20 -0.1 725,620 - ABIE40_RS30185 0.22 -0.4 725,827 + ABIE40_RS30185 0.28 -0.1 725,847 + ABIE40_RS30185 0.28 +0.1 725,847 + ABIE40_RS30185 0.28 -1.0 725,847 + ABIE40_RS30185 0.28 +1.0 725,847 + ABIE40_RS30185 0.28 +0.5 725,847 + ABIE40_RS30185 0.28 +1.3 725,848 - ABIE40_RS30185 0.28 -1.7 725,848 - ABIE40_RS30185 0.28 +0.3 726,094 - ABIE40_RS30185 0.35 -0.1 726,111 + ABIE40_RS30185 0.36 +0.3 726,111 + ABIE40_RS30185 0.36 +0.1 726,149 - ABIE40_RS30185 0.37 -0.4 726,342 + ABIE40_RS30185 0.42 +0.7 726,342 + ABIE40_RS30185 0.42 -0.8 726,342 + ABIE40_RS30185 0.42 -0.5 726,343 - ABIE40_RS30185 0.42 -0.3 726,389 + ABIE40_RS30185 0.44 +0.7 726,389 + ABIE40_RS30185 0.44 -1.7 726,390 - ABIE40_RS30185 0.44 -1.4 726,390 - ABIE40_RS30185 0.44 -1.0 726,508 + ABIE40_RS30185 0.47 -0.3 726,508 + ABIE40_RS30185 0.47 +0.4 726,508 + ABIE40_RS30185 0.47 +0.3 726,508 + ABIE40_RS30185 0.47 +1.0 726,508 + ABIE40_RS30185 0.47 -0.2 726,509 - ABIE40_RS30185 0.47 -0.2 726,509 - ABIE40_RS30185 0.47 -1.6 726,901 + ABIE40_RS30185 0.58 -0.4 726,902 - ABIE40_RS30185 0.58 +5.3 726,929 + ABIE40_RS30185 0.59 -0.3 727,104 - ABIE40_RS30185 0.64 -0.5 727,104 - ABIE40_RS30185 0.64 -0.1 727,117 + ABIE40_RS30185 0.64 -0.1 727,117 + ABIE40_RS30185 0.64 -0.2 727,117 + ABIE40_RS30185 0.64 -0.3 727,183 + ABIE40_RS30185 0.66 -0.0 727,183 + ABIE40_RS30185 0.66 -0.6 727,184 - ABIE40_RS30185 0.66 +0.1 727,235 - ABIE40_RS30185 0.68 +0.5 727,235 - ABIE40_RS30185 0.68 +0.3 727,268 + ABIE40_RS30185 0.69 -0.1 727,269 - ABIE40_RS30185 0.69 -0.7 727,337 + ABIE40_RS30185 0.71 +0.2 727,337 + ABIE40_RS30185 0.71 -0.7 727,337 + ABIE40_RS30185 0.71 +0.2 727,851 + ABIE40_RS30185 0.85 +0.1 727,851 + ABIE40_RS30185 0.85 +0.2 727,851 + ABIE40_RS30185 0.85 +0.1 727,851 + ABIE40_RS30185 0.85 +0.3 727,851 + ABIE40_RS30185 0.85 +0.5 727,852 - ABIE40_RS30185 0.85 -0.1 727,871 + ABIE40_RS30185 0.86 -1.2 727,902 + ABIE40_RS30185 0.87 +0.3 727,903 - ABIE40_RS30185 0.87 -0.9 727,985 - ABIE40_RS30185 0.89 +0.9 728,089 - +1.0 728,244 + -0.2 728,245 - -0.3 728,266 + +0.3 728,271 + +3.3 728,306 - -0.4 728,306 - -0.0 728,306 - -1.0 728,351 - +0.7 728,361 + +0.2 728,362 - -0.8 728,366 + +1.9 728,366 + -1.0 728,367 - +1.1 728,368 + -1.6 728,368 + -2.4 728,368 + -0.7 728,368 + -0.6 728,369 - -0.4 728,369 - +1.3 728,379 - -1.4 728,447 + +2.5 728,448 - -0.2 728,448 - -0.3 728,450 - -1.4 728,450 - -0.3 728,450 - -0.0 728,543 - +0.7 728,547 - -1.2 728,547 - -0.2 728,547 - -0.5 728,547 - -0.6 728,686 - +0.3 728,699 - +0.2 728,754 + -1.5 728,754 + +0.3 728,754 + -0.7 728,754 + -0.2 728,754 + -0.7 728,755 - -0.5 728,755 - -1.3 728,755 - -0.1 728,755 - +0.5 728,755 - +3.0 728,755 - -1.2 728,755 - -0.5 728,755 - -0.4 728,755 - -0.6 728,755 - +0.3 728,755 - +0.5 728,805 + -2.1 728,805 + -1.5 728,805 + -1.4 728,805 + +0.6 728,805 + -1.5 728,806 - +0.1 728,806 - +0.8 728,809 + -0.8 728,809 + -0.3 728,809 + -1.6 728,809 + +0.3 728,809 + +0.8 728,809 + +0.2 728,809 + -0.7 728,810 - -0.0 728,810 - -0.5 728,810 - +0.3 728,810 - +1.0 728,810 - -0.4 728,810 - +0.2 728,810 - +2.3 728,810 - -2.1 728,853 - +0.0 728,986 + -0.5 728,986 + +1.7 728,986 + -0.2 728,986 + -2.3 728,986 + -0.2 728,987 - -0.3 728,987 - -0.2 729,093 + ABIE40_RS30190 0.20 +0.3 729,093 + ABIE40_RS30190 0.20 -1.9 729,093 + ABIE40_RS30190 0.20 -1.5 729,093 + ABIE40_RS30190 0.20 -1.1 729,093 + ABIE40_RS30190 0.20 -1.4 729,093 + ABIE40_RS30190 0.20 -0.7 729,093 + ABIE40_RS30190 0.20 +2.3 729,093 + ABIE40_RS30190 0.20 +0.5 729,094 - ABIE40_RS30190 0.20 +0.8 729,094 - ABIE40_RS30190 0.20 -0.3 729,094 - ABIE40_RS30190 0.20 +0.1 729,094 - ABIE40_RS30190 0.20 -0.8 729,094 - ABIE40_RS30190 0.20 -1.6 729,095 + ABIE40_RS30190 0.21 +0.8 729,095 + ABIE40_RS30190 0.21 +0.3 729,096 - ABIE40_RS30190 0.21 -2.4 729,096 - ABIE40_RS30190 0.21 +0.7 729,096 - ABIE40_RS30190 0.21 +0.4 729,096 - ABIE40_RS30190 0.21 -0.6 729,096 - ABIE40_RS30190 0.21 -2.9 729,096 - ABIE40_RS30190 0.21 +1.2 729,211 + ABIE40_RS30190 0.51 -0.2 729,211 + ABIE40_RS30190 0.51 -0.1 729,212 - ABIE40_RS30190 0.52 -1.7 729,271 + ABIE40_RS30190 0.67 -0.6 729,271 + ABIE40_RS30190 0.67 +0.7 729,271 + ABIE40_RS30190 0.67 +0.1 729,271 + ABIE40_RS30190 0.67 +0.0 729,271 + ABIE40_RS30190 0.67 -0.5 729,271 + ABIE40_RS30190 0.67 +1.4 729,272 - ABIE40_RS30190 0.67 -0.3 729,272 - ABIE40_RS30190 0.67 -0.8 729,272 - ABIE40_RS30190 0.67 +0.2 729,272 - ABIE40_RS30190 0.67 -1.0
Or see this region's nucleotide sequence