Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22045

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22040 and ABIE40_RS22045 are separated by 19 nucleotidesABIE40_RS22045 and ABIE40_RS22050 overlap by 4 nucleotides ABIE40_RS22040: ABIE40_RS22040 - TolC family outer membrane protein, at 543,169 to 544,530 _RS22040 ABIE40_RS22045: ABIE40_RS22045 - type I secretion system permease/ATPase, at 544,550 to 546,745 _RS22045 ABIE40_RS22050: ABIE40_RS22050 - HlyD family type I secretion periplasmic adaptor subunit, at 546,742 to 548,034 _RS22050 Position (kb) 544 545 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 543.853 kb on + strand, within ABIE40_RS22040at 543.853 kb on + strand, within ABIE40_RS22040at 543.854 kb on - strand, within ABIE40_RS22040at 543.854 kb on - strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.913 kb on + strand, within ABIE40_RS22040at 543.991 kb on + strand, within ABIE40_RS22040at 544.024 kb on + strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.025 kb on - strand, within ABIE40_RS22040at 544.182 kb on + strand, within ABIE40_RS22040at 544.183 kb on - strand, within ABIE40_RS22040at 544.219 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.339 kb on + strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.340 kb on - strand, within ABIE40_RS22040at 544.411 kb on + strandat 544.412 kb on - strandat 544.459 kb on + strandat 544.508 kb on + strandat 544.509 kb on - strandat 544.528 kb on + strandat 544.528 kb on + strandat 544.528 kb on + strandat 544.529 kb on - strandat 544.560 kb on + strandat 544.560 kb on + strandat 544.616 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.631 kb on + strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.856 kb on + strand, within ABIE40_RS22045at 544.856 kb on + strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.857 kb on - strand, within ABIE40_RS22045at 544.933 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.955 kb on + strand, within ABIE40_RS22045at 544.956 kb on - strand, within ABIE40_RS22045at 544.958 kb on + strand, within ABIE40_RS22045at 544.959 kb on - strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.054 kb on + strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.055 kb on - strand, within ABIE40_RS22045at 545.129 kb on + strand, within ABIE40_RS22045at 545.130 kb on - strand, within ABIE40_RS22045at 545.130 kb on - strand, within ABIE40_RS22045at 545.199 kb on - strand, within ABIE40_RS22045at 545.247 kb on - strand, within ABIE40_RS22045at 545.247 kb on - strand, within ABIE40_RS22045at 545.342 kb on + strand, within ABIE40_RS22045at 545.342 kb on + strand, within ABIE40_RS22045at 545.343 kb on - strand, within ABIE40_RS22045at 545.363 kb on + strand, within ABIE40_RS22045at 545.363 kb on + strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.364 kb on - strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.450 kb on + strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045at 545.451 kb on - strand, within ABIE40_RS22045at 545.675 kb on + strand, within ABIE40_RS22045at 545.675 kb on + strand, within ABIE40_RS22045at 545.707 kb on + strand, within ABIE40_RS22045at 545.707 kb on + strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.708 kb on - strand, within ABIE40_RS22045at 545.783 kb on + strand, within ABIE40_RS22045at 545.783 kb on + strand, within ABIE40_RS22045at 545.783 kb on + strand, within ABIE40_RS22045at 545.783 kb on + strand, within ABIE40_RS22045at 545.783 kb on + strand, within ABIE40_RS22045at 545.784 kb on - strand, within ABIE40_RS22045at 545.784 kb on - strand, within ABIE40_RS22045at 545.784 kb on - strand, within ABIE40_RS22045at 545.784 kb on - strand, within ABIE40_RS22045at 545.784 kb on - strand, within ABIE40_RS22045at 546.027 kb on - strand, within ABIE40_RS22045at 546.098 kb on - strand, within ABIE40_RS22045at 546.204 kb on - strand, within ABIE40_RS22045at 546.997 kb on - strand, within ABIE40_RS22050at 547.090 kb on + strand, within ABIE40_RS22050at 547.186 kb on + strand, within ABIE40_RS22050at 547.186 kb on + strand, within ABIE40_RS22050at 547.187 kb on - strand, within ABIE40_RS22050at 547.303 kb on + strand, within ABIE40_RS22050at 547.303 kb on + strand, within ABIE40_RS22050at 547.377 kb on + strand, within ABIE40_RS22050at 547.406 kb on - strand, within ABIE40_RS22050at 547.406 kb on - strand, within ABIE40_RS22050at 547.406 kb on - strand, within ABIE40_RS22050at 547.611 kb on + strand, within ABIE40_RS22050at 547.612 kb on - strand, within ABIE40_RS22050at 547.639 kb on + strand, within ABIE40_RS22050at 547.639 kb on + strand, within ABIE40_RS22050at 547.639 kb on + strand, within ABIE40_RS22050at 547.687 kb on - strand, within ABIE40_RS22050

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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543,853 + ABIE40_RS22040 0.50 +0.4
543,853 + ABIE40_RS22040 0.50 +0.2
543,854 - ABIE40_RS22040 0.50 -0.4
543,854 - ABIE40_RS22040 0.50 +0.3
543,913 + ABIE40_RS22040 0.55 -0.5
543,913 + ABIE40_RS22040 0.55 -0.3
543,913 + ABIE40_RS22040 0.55 -0.8
543,991 + ABIE40_RS22040 0.60 -0.2
544,024 + ABIE40_RS22040 0.63 +0.3
544,025 - ABIE40_RS22040 0.63 -1.2
544,025 - ABIE40_RS22040 0.63 -0.0
544,025 - ABIE40_RS22040 0.63 -0.8
544,182 + ABIE40_RS22040 0.74 -0.5
544,183 - ABIE40_RS22040 0.74 +1.6
544,219 + ABIE40_RS22040 0.77 +0.1
544,339 + ABIE40_RS22040 0.86 +0.4
544,339 + ABIE40_RS22040 0.86 -0.7
544,339 + ABIE40_RS22040 0.86 -0.6
544,339 + ABIE40_RS22040 0.86 -0.3
544,339 + ABIE40_RS22040 0.86 +0.1
544,340 - ABIE40_RS22040 0.86 -0.8
544,340 - ABIE40_RS22040 0.86 -0.3
544,340 - ABIE40_RS22040 0.86 -0.1
544,411 + -0.3
544,412 - +0.2
544,459 + -0.1
544,508 + +0.6
544,509 - -0.4
544,528 + +0.7
544,528 + +0.0
544,528 + -0.6
544,529 - +0.1
544,560 + +1.9
544,560 + +0.2
544,616 + +1.0
544,631 + +4.0
544,631 + +0.1
544,631 + +0.3
544,631 + +0.0
544,631 + -0.1
544,631 + -1.7
544,631 + -0.3
544,632 - -0.1
544,632 - -0.8
544,632 - +0.3
544,632 - +0.0
544,632 - -0.9
544,632 - +0.1
544,632 - -2.8
544,632 - +0.4
544,632 - -1.0
544,856 + ABIE40_RS22045 0.14 +0.3
544,856 + ABIE40_RS22045 0.14 -1.6
544,857 - ABIE40_RS22045 0.14 +0.5
544,857 - ABIE40_RS22045 0.14 -0.5
544,857 - ABIE40_RS22045 0.14 +1.7
544,857 - ABIE40_RS22045 0.14 +0.4
544,933 + ABIE40_RS22045 0.17 -0.2
544,955 + ABIE40_RS22045 0.18 +0.4
544,955 + ABIE40_RS22045 0.18 +1.9
544,955 + ABIE40_RS22045 0.18 -0.5
544,956 - ABIE40_RS22045 0.18 -1.3
544,958 + ABIE40_RS22045 0.19 -0.8
544,959 - ABIE40_RS22045 0.19 +1.5
545,054 + ABIE40_RS22045 0.23 -0.4
545,054 + ABIE40_RS22045 0.23 -1.0
545,054 + ABIE40_RS22045 0.23 -1.2
545,054 + ABIE40_RS22045 0.23 -2.0
545,054 + ABIE40_RS22045 0.23 -1.1
545,054 + ABIE40_RS22045 0.23 -0.9
545,054 + ABIE40_RS22045 0.23 +1.0
545,054 + ABIE40_RS22045 0.23 -0.9
545,055 - ABIE40_RS22045 0.23 +0.0
545,055 - ABIE40_RS22045 0.23 +0.4
545,055 - ABIE40_RS22045 0.23 +0.3
545,055 - ABIE40_RS22045 0.23 -0.4
545,055 - ABIE40_RS22045 0.23 -1.4
545,055 - ABIE40_RS22045 0.23 +0.6
545,055 - ABIE40_RS22045 0.23 -0.3
545,129 + ABIE40_RS22045 0.26 -0.2
545,130 - ABIE40_RS22045 0.26 -0.7
545,130 - ABIE40_RS22045 0.26 +0.4
545,199 - ABIE40_RS22045 0.30 -0.7
545,247 - ABIE40_RS22045 0.32 -0.6
545,247 - ABIE40_RS22045 0.32 +1.4
545,342 + ABIE40_RS22045 0.36 -0.4
545,342 + ABIE40_RS22045 0.36 -0.0
545,343 - ABIE40_RS22045 0.36 +0.3
545,363 + ABIE40_RS22045 0.37 +0.5
545,363 + ABIE40_RS22045 0.37 -0.2
545,364 - ABIE40_RS22045 0.37 +0.1
545,364 - ABIE40_RS22045 0.37 -0.5
545,364 - ABIE40_RS22045 0.37 +0.9
545,364 - ABIE40_RS22045 0.37 -0.0
545,364 - ABIE40_RS22045 0.37 +0.1
545,364 - ABIE40_RS22045 0.37 -1.0
545,450 + ABIE40_RS22045 0.41 -0.4
545,450 + ABIE40_RS22045 0.41 +0.2
545,450 + ABIE40_RS22045 0.41 +0.7
545,450 + ABIE40_RS22045 0.41 +0.4
545,451 - ABIE40_RS22045 0.41 -0.3
545,451 - ABIE40_RS22045 0.41 -0.0
545,451 - ABIE40_RS22045 0.41 -1.8
545,675 + ABIE40_RS22045 0.51 -1.2
545,675 + ABIE40_RS22045 0.51 -0.5
545,707 + ABIE40_RS22045 0.53 +0.3
545,707 + ABIE40_RS22045 0.53 -1.0
545,708 - ABIE40_RS22045 0.53 +0.8
545,708 - ABIE40_RS22045 0.53 -0.7
545,708 - ABIE40_RS22045 0.53 +1.2
545,708 - ABIE40_RS22045 0.53 -0.9
545,708 - ABIE40_RS22045 0.53 -0.3
545,708 - ABIE40_RS22045 0.53 +0.1
545,783 + ABIE40_RS22045 0.56 +0.3
545,783 + ABIE40_RS22045 0.56 -0.5
545,783 + ABIE40_RS22045 0.56 -1.3
545,783 + ABIE40_RS22045 0.56 +1.0
545,783 + ABIE40_RS22045 0.56 -0.0
545,784 - ABIE40_RS22045 0.56 -0.3
545,784 - ABIE40_RS22045 0.56 +0.5
545,784 - ABIE40_RS22045 0.56 +0.6
545,784 - ABIE40_RS22045 0.56 -0.4
545,784 - ABIE40_RS22045 0.56 -1.0
546,027 - ABIE40_RS22045 0.67 -0.4
546,098 - ABIE40_RS22045 0.70 -0.4
546,204 - ABIE40_RS22045 0.75 -0.3
546,997 - ABIE40_RS22050 0.20 +1.0
547,090 + ABIE40_RS22050 0.27 -0.9
547,186 + ABIE40_RS22050 0.34 -0.6
547,186 + ABIE40_RS22050 0.34 -0.2
547,187 - ABIE40_RS22050 0.34 -1.0
547,303 + ABIE40_RS22050 0.43 -0.3
547,303 + ABIE40_RS22050 0.43 -0.6
547,377 + ABIE40_RS22050 0.49 -0.5
547,406 - ABIE40_RS22050 0.51 +0.8
547,406 - ABIE40_RS22050 0.51 -0.9
547,406 - ABIE40_RS22050 0.51 -0.1
547,611 + ABIE40_RS22050 0.67 -0.3
547,612 - ABIE40_RS22050 0.67 -0.2
547,639 + ABIE40_RS22050 0.69 -0.8
547,639 + ABIE40_RS22050 0.69 -0.9
547,639 + ABIE40_RS22050 0.69 -0.9
547,687 - ABIE40_RS22050 0.73 -0.1

Or see this region's nucleotide sequence