Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16610

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,306,785	+		ABIE40_RS16600	0.61	-0.8
3,306,785	+		ABIE40_RS16600	0.61	-0.7
3,306,786	-		ABIE40_RS16600	0.61	+0.3
3,306,786	-		ABIE40_RS16600	0.61	+0.2
3,306,816	-		ABIE40_RS16600	0.63	-0.4
3,306,944	+		ABIE40_RS16600	0.74	-2.3
3,306,945	-		ABIE40_RS16600	0.75	-0.1
3,306,954	+		ABIE40_RS16600	0.75	+0.2
3,307,184	-				-0.5
3,307,227	+				-1.8
3,307,228	-				+1.6
3,307,228	-				-0.0
3,307,283	+				+2.6
3,307,302	+				-1.1
3,307,302	+				-0.4
3,307,302	+				-0.4
3,307,302	+				-0.0
3,307,303	-				-1.2
3,307,303	-				+0.2
3,307,303	-				+0.3
3,307,303	-				+1.1
3,307,303	-				-0.6
3,307,303	-				-2.1
3,307,461	+		ABIE40_RS16605	0.56	-0.7
3,307,462	-		ABIE40_RS16605	0.57	+1.6
3,307,488	+		ABIE40_RS16605	0.68	-0.9
3,307,488	+		ABIE40_RS16605	0.68	+0.3
3,307,488	+		ABIE40_RS16605	0.68	-0.7
3,307,488	+		ABIE40_RS16605	0.68	+0.1
3,307,489	-		ABIE40_RS16605	0.69	+1.8
3,307,489	-		ABIE40_RS16605	0.69	-1.5
3,307,489	-		ABIE40_RS16605	0.69	+0.2
3,307,489	-		ABIE40_RS16605	0.69	+2.0
3,307,489	-		ABIE40_RS16605	0.69	-1.1
3,307,489	-		ABIE40_RS16605	0.69	-0.5
3,307,509	+		ABIE40_RS16605	0.78	-1.4
3,307,509	+		ABIE40_RS16605	0.78	-0.4
3,307,510	-		ABIE40_RS16605	0.78	-2.8
3,307,510	-		ABIE40_RS16605	0.78	-1.5
3,307,510	-		ABIE40_RS16605	0.78	-1.2
3,307,510	-		ABIE40_RS16605	0.78	+0.4
3,307,660	+				-2.4
3,307,660	+				+0.3
3,307,661	-				-0.4
3,307,661	-				+0.1
3,307,708	-				-0.6
3,307,708	-				-1.3
3,307,834	+		ABIE40_RS16610	0.13	+0.9
3,307,834	+		ABIE40_RS16610	0.13	-1.1
3,307,834	+		ABIE40_RS16610	0.13	-2.3
3,307,834	+		ABIE40_RS16610	0.13	-0.5
3,307,834	+		ABIE40_RS16610	0.13	-0.5
3,307,834	+		ABIE40_RS16610	0.13	-0.5
3,307,834	+		ABIE40_RS16610	0.13	-0.1
3,307,834	+		ABIE40_RS16610	0.13	+0.5
3,307,834	+		ABIE40_RS16610	0.13	-1.5
3,307,834	+		ABIE40_RS16610	0.13	+0.0
3,307,835	-		ABIE40_RS16610	0.13	-0.7
3,307,835	-		ABIE40_RS16610	0.13	+0.9
3,307,835	-		ABIE40_RS16610	0.13	-1.1
3,307,835	-		ABIE40_RS16610	0.13	-0.1
3,307,835	-		ABIE40_RS16610	0.13	-0.4
3,307,835	-		ABIE40_RS16610	0.13	+0.1
3,307,835	-		ABIE40_RS16610	0.13	-0.4
3,307,835	-		ABIE40_RS16610	0.13	-0.4
3,307,835	-		ABIE40_RS16610	0.13	+1.5
3,307,835	-		ABIE40_RS16610	0.13	-2.7
3,307,835	-		ABIE40_RS16610	0.13	-0.7
3,307,835	-		ABIE40_RS16610	0.13	+1.4
3,307,835	-		ABIE40_RS16610	0.13	+0.1
3,307,835	-		ABIE40_RS16610	0.13	-2.6
3,307,839	-		ABIE40_RS16610	0.14	+0.0
3,307,942	+		ABIE40_RS16610	0.27	+0.1
3,307,942	+		ABIE40_RS16610	0.27	-0.6
3,307,942	+		ABIE40_RS16610	0.27	+0.6
3,307,943	-		ABIE40_RS16610	0.27	-0.5
3,307,943	-		ABIE40_RS16610	0.27	+0.8
3,307,943	-		ABIE40_RS16610	0.27	-0.8
3,307,943	-		ABIE40_RS16610	0.27	+0.3
3,307,943	-		ABIE40_RS16610	0.27	-0.3
3,307,943	-		ABIE40_RS16610	0.27	-0.6
3,307,943	-		ABIE40_RS16610	0.27	+0.9
3,307,943	-		ABIE40_RS16610	0.27	-0.4
3,307,981	+		ABIE40_RS16610	0.32	-0.3
3,307,981	+		ABIE40_RS16610	0.32	+0.1
3,307,981	+		ABIE40_RS16610	0.32	-1.4
3,307,982	-		ABIE40_RS16610	0.33	-0.5
3,307,982	-		ABIE40_RS16610	0.33	-0.5
3,308,086	+		ABIE40_RS16610	0.46	+0.1
3,308,087	-		ABIE40_RS16610	0.46	+0.5
3,308,087	-		ABIE40_RS16610	0.46	-0.0
3,308,266	+		ABIE40_RS16610	0.70	-0.5
3,308,266	+		ABIE40_RS16610	0.70	-1.1
3,308,267	-		ABIE40_RS16610	0.70	-0.1
3,308,269	+		ABIE40_RS16610	0.71	-0.0
3,308,269	+		ABIE40_RS16610	0.71	+1.6
3,308,269	+		ABIE40_RS16610	0.71	+0.5
3,308,269	+		ABIE40_RS16610	0.71	+0.8
3,308,269	+		ABIE40_RS16610	0.71	-0.4
3,308,269	+		ABIE40_RS16610	0.71	-0.6
3,308,269	+		ABIE40_RS16610	0.71	+0.2
3,308,269	+		ABIE40_RS16610	0.71	-0.1
3,308,270	-		ABIE40_RS16610	0.71	-0.2
3,308,270	-		ABIE40_RS16610	0.71	-0.1
3,308,270	-		ABIE40_RS16610	0.71	-0.4
3,308,270	-		ABIE40_RS16610	0.71	+0.7
3,308,270	-		ABIE40_RS16610	0.71	-0.6
3,308,270	-		ABIE40_RS16610	0.71	+0.0
3,308,270	-		ABIE40_RS16610	0.71	-0.2
3,308,272	+		ABIE40_RS16610	0.71	-0.2
3,308,272	+		ABIE40_RS16610	0.71	-1.0
3,308,272	+		ABIE40_RS16610	0.71	+0.3
3,308,272	+		ABIE40_RS16610	0.71	-1.1
3,308,272	+		ABIE40_RS16610	0.71	+0.9
3,308,272	+		ABIE40_RS16610	0.71	-1.9
3,308,272	+		ABIE40_RS16610	0.71	+2.1
3,308,273	-		ABIE40_RS16610	0.71	-0.2
3,308,287	+		ABIE40_RS16610	0.73	-0.1
3,308,287	+		ABIE40_RS16610	0.73	+0.0
3,308,287	+		ABIE40_RS16610	0.73	-1.7
3,308,287	+		ABIE40_RS16610	0.73	+0.1
3,308,287	+		ABIE40_RS16610	0.73	+0.9
3,308,287	+		ABIE40_RS16610	0.73	-0.5
3,308,288	-		ABIE40_RS16610	0.73	-0.8
3,308,288	-		ABIE40_RS16610	0.73	-0.5
3,308,288	-		ABIE40_RS16610	0.73	-0.9
3,308,288	-		ABIE40_RS16610	0.73	+0.1
3,308,288	-		ABIE40_RS16610	0.73	-0.2
3,308,288	-		ABIE40_RS16610	0.73	-0.7
3,308,288	-		ABIE40_RS16610	0.73	-1.0
3,308,357	+		ABIE40_RS16610	0.82	-1.8
3,308,357	+		ABIE40_RS16610	0.82	+0.1
3,308,357	+		ABIE40_RS16610	0.82	-0.7
3,308,358	-		ABIE40_RS16610	0.82	-0.7
3,308,358	-		ABIE40_RS16610	0.82	-0.8
3,308,359	+		ABIE40_RS16610	0.83	-1.6
3,308,359	+		ABIE40_RS16610	0.83	-1.4
3,308,359	+		ABIE40_RS16610	0.83	+0.1
3,308,359	+		ABIE40_RS16610	0.83	-1.3
3,308,359	+		ABIE40_RS16610	0.83	-1.1
3,308,360	-		ABIE40_RS16610	0.83	-0.9
3,308,360	-		ABIE40_RS16610	0.83	+1.2
3,308,419	+				-1.4
3,308,420	-				-0.7
3,308,515	-				-1.3
3,308,523	+				-1.4
3,308,523	+				+0.2
3,308,524	-				-0.9
3,308,559	+				-0.2
3,308,578	-				-0.5
3,308,578	-				-1.4
3,308,614	+				-0.5
3,308,706	+				+0.4
3,308,725	+				-0.9
3,308,725	+				+1.5
3,308,725	+				+0.5
3,308,725	+				-0.5
3,308,725	+				+0.4
3,308,726	-				-1.8
3,308,727	-				+1.1
3,308,865	-		ABIE40_RS16615	0.10	+1.3
3,308,932	+		ABIE40_RS16615	0.13	-1.2
3,308,932	+		ABIE40_RS16615	0.13	+0.8
3,308,932	+		ABIE40_RS16615	0.13	+0.9
3,308,932	+		ABIE40_RS16615	0.13	+0.5
3,308,932	+		ABIE40_RS16615	0.13	-0.7
3,308,933	-		ABIE40_RS16615	0.13	-1.7
3,308,933	-		ABIE40_RS16615	0.13	-1.4
3,308,994	+		ABIE40_RS16615	0.16	+0.3
3,308,994	+		ABIE40_RS16615	0.16	+0.6
3,308,994	+		ABIE40_RS16615	0.16	+0.5
3,308,995	-		ABIE40_RS16615	0.16	-0.7
3,309,167	+		ABIE40_RS16615	0.23	-0.1
3,309,167	+		ABIE40_RS16615	0.23	-1.6
3,309,167	+		ABIE40_RS16615	0.23	+1.0
3,309,167	+		ABIE40_RS16615	0.23	-1.7
3,309,167	+		ABIE40_RS16615	0.23	+0.5
3,309,167	+		ABIE40_RS16615	0.23	+1.1
3,309,167	+		ABIE40_RS16615	0.23	+0.4
3,309,168	-		ABIE40_RS16615	0.23	+1.4
3,309,168	-		ABIE40_RS16615	0.23	+0.1
3,309,168	-		ABIE40_RS16615	0.23	-1.2
3,309,168	-		ABIE40_RS16615	0.23	+0.9
3,309,237	-		ABIE40_RS16615	0.26	-0.8
3,309,349	+		ABIE40_RS16615	0.31	-1.4
3,309,349	+		ABIE40_RS16615	0.31	+0.1
3,309,350	-		ABIE40_RS16615	0.31	-0.4
3,309,361	+		ABIE40_RS16615	0.32	+0.3
3,309,430	+		ABIE40_RS16615	0.35	+1.8