Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00435

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00425 and ABIE40_RS00430 are separated by 104 nucleotidesABIE40_RS00430 and ABIE40_RS00435 are separated by 81 nucleotidesABIE40_RS00435 and ABIE40_RS00440 are separated by 198 nucleotides ABIE40_RS00425: ABIE40_RS00425 - SagB/ThcOx family dehydrogenase, at 83,470 to 84,513 _RS00425 ABIE40_RS00430: ABIE40_RS00430 - helix-turn-helix transcriptional regulator, at 84,618 to 84,971 _RS00430 ABIE40_RS00435: ABIE40_RS00435 - hypothetical protein, at 85,053 to 85,259 _RS00435 ABIE40_RS00440: ABIE40_RS00440 - oxidoreductase, at 85,458 to 86,441 _RS00440 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3at 84.109 kb on + strand, within ABIE40_RS00425at 84.109 kb on + strand, within ABIE40_RS00425at 84.110 kb on - strand, within ABIE40_RS00425at 84.118 kb on + strand, within ABIE40_RS00425at 84.118 kb on + strand, within ABIE40_RS00425at 84.118 kb on + strand, within ABIE40_RS00425at 84.118 kb on + strand, within ABIE40_RS00425at 84.118 kb on + strand, within ABIE40_RS00425at 84.119 kb on - strand, within ABIE40_RS00425at 84.119 kb on - strand, within ABIE40_RS00425at 84.119 kb on - strand, within ABIE40_RS00425at 84.119 kb on - strand, within ABIE40_RS00425at 84.160 kb on + strand, within ABIE40_RS00425at 84.160 kb on + strand, within ABIE40_RS00425at 84.160 kb on + strand, within ABIE40_RS00425at 84.160 kb on + strand, within ABIE40_RS00425at 84.160 kb on + strand, within ABIE40_RS00425at 84.161 kb on - strand, within ABIE40_RS00425at 84.161 kb on - strand, within ABIE40_RS00425at 84.161 kb on - strand, within ABIE40_RS00425at 84.161 kb on - strand, within ABIE40_RS00425at 84.166 kb on + strand, within ABIE40_RS00425at 84.167 kb on - strand, within ABIE40_RS00425at 84.167 kb on - strand, within ABIE40_RS00425at 84.252 kb on + strand, within ABIE40_RS00425at 84.253 kb on - strand, within ABIE40_RS00425at 84.272 kb on + strand, within ABIE40_RS00425at 84.272 kb on + strand, within ABIE40_RS00425at 84.273 kb on - strand, within ABIE40_RS00425at 84.273 kb on - strand, within ABIE40_RS00425at 84.273 kb on - strand, within ABIE40_RS00425at 84.285 kb on + strand, within ABIE40_RS00425at 84.286 kb on - strand, within ABIE40_RS00425at 84.307 kb on + strand, within ABIE40_RS00425at 84.308 kb on - strand, within ABIE40_RS00425at 84.308 kb on - strand, within ABIE40_RS00425at 84.326 kb on - strand, within ABIE40_RS00425at 84.326 kb on - strand, within ABIE40_RS00425at 84.478 kb on + strandat 84.478 kb on + strandat 84.479 kb on - strandat 84.479 kb on - strandat 84.479 kb on - strandat 84.487 kb on - strandat 84.487 kb on - strandat 84.487 kb on - strandat 84.511 kb on + strandat 84.512 kb on - strandat 84.512 kb on - strandat 84.567 kb on + strandat 84.577 kb on - strandat 84.577 kb on - strandat 84.579 kb on + strandat 84.580 kb on - strandat 84.580 kb on - strandat 84.580 kb on - strandat 84.600 kb on - strandat 84.600 kb on - strandat 84.655 kb on + strand, within ABIE40_RS00430at 84.655 kb on + strand, within ABIE40_RS00430at 84.655 kb on + strand, within ABIE40_RS00430at 84.655 kb on + strand, within ABIE40_RS00430at 84.738 kb on + strand, within ABIE40_RS00430at 84.739 kb on - strand, within ABIE40_RS00430at 84.739 kb on - strand, within ABIE40_RS00430at 84.739 kb on - strand, within ABIE40_RS00430at 84.873 kb on + strand, within ABIE40_RS00430at 84.873 kb on + strand, within ABIE40_RS00430at 84.874 kb on - strand, within ABIE40_RS00430at 84.891 kb on + strand, within ABIE40_RS00430at 84.892 kb on - strand, within ABIE40_RS00430at 84.969 kb on + strandat 85.100 kb on + strand, within ABIE40_RS00435at 85.100 kb on + strand, within ABIE40_RS00435at 85.101 kb on - strand, within ABIE40_RS00435at 85.101 kb on - strand, within ABIE40_RS00435at 85.101 kb on - strand, within ABIE40_RS00435at 85.101 kb on - strand, within ABIE40_RS00435at 85.117 kb on + strand, within ABIE40_RS00435at 85.117 kb on + strand, within ABIE40_RS00435at 85.118 kb on - strand, within ABIE40_RS00435at 85.118 kb on - strand, within ABIE40_RS00435at 85.195 kb on + strand, within ABIE40_RS00435at 85.195 kb on + strand, within ABIE40_RS00435at 85.359 kb on + strandat 85.359 kb on + strandat 85.359 kb on + strandat 85.360 kb on - strandat 85.360 kb on - strandat 85.411 kb on + strandat 85.412 kb on - strandat 85.432 kb on + strandat 85.432 kb on + strandat 85.433 kb on - strandat 85.434 kb on + strandat 85.434 kb on + strandat 85.434 kb on + strandat 85.434 kb on + strandat 85.434 kb on + strandat 85.435 kb on - strandat 85.435 kb on - strandat 85.435 kb on - strandat 85.459 kb on + strandat 85.459 kb on + strandat 85.603 kb on + strand, within ABIE40_RS00440at 85.603 kb on + strand, within ABIE40_RS00440at 85.604 kb on - strand, within ABIE40_RS00440at 85.733 kb on + strand, within ABIE40_RS00440at 85.888 kb on + strand, within ABIE40_RS00440at 85.889 kb on - strand, within ABIE40_RS00440at 85.889 kb on - strand, within ABIE40_RS00440at 85.926 kb on - strand, within ABIE40_RS00440at 85.926 kb on - strand, within ABIE40_RS00440at 85.971 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.027 kb on + strand, within ABIE40_RS00440at 86.028 kb on - strand, within ABIE40_RS00440at 86.028 kb on - strand, within ABIE40_RS00440at 86.028 kb on - strand, within ABIE40_RS00440at 86.071 kb on + strand, within ABIE40_RS00440at 86.071 kb on + strand, within ABIE40_RS00440at 86.117 kb on + strand, within ABIE40_RS00440at 86.117 kb on + strand, within ABIE40_RS00440at 86.118 kb on - strand, within ABIE40_RS00440

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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84,109 + ABIE40_RS00425 0.61 +0.7
84,109 + ABIE40_RS00425 0.61 -0.8
84,110 - ABIE40_RS00425 0.61 +2.8
84,118 + ABIE40_RS00425 0.62 -0.0
84,118 + ABIE40_RS00425 0.62 +0.1
84,118 + ABIE40_RS00425 0.62 +0.6
84,118 + ABIE40_RS00425 0.62 -0.7
84,118 + ABIE40_RS00425 0.62 +0.6
84,119 - ABIE40_RS00425 0.62 -0.1
84,119 - ABIE40_RS00425 0.62 -1.4
84,119 - ABIE40_RS00425 0.62 +1.1
84,119 - ABIE40_RS00425 0.62 -0.4
84,160 + ABIE40_RS00425 0.66 -0.6
84,160 + ABIE40_RS00425 0.66 -1.4
84,160 + ABIE40_RS00425 0.66 +0.8
84,160 + ABIE40_RS00425 0.66 -1.7
84,160 + ABIE40_RS00425 0.66 -0.6
84,161 - ABIE40_RS00425 0.66 +0.7
84,161 - ABIE40_RS00425 0.66 +0.8
84,161 - ABIE40_RS00425 0.66 -0.6
84,161 - ABIE40_RS00425 0.66 +1.5
84,166 + ABIE40_RS00425 0.67 +2.2
84,167 - ABIE40_RS00425 0.67 +1.9
84,167 - ABIE40_RS00425 0.67 -0.6
84,252 + ABIE40_RS00425 0.75 +0.9
84,253 - ABIE40_RS00425 0.75 -1.0
84,272 + ABIE40_RS00425 0.77 +0.3
84,272 + ABIE40_RS00425 0.77 +0.5
84,273 - ABIE40_RS00425 0.77 -0.0
84,273 - ABIE40_RS00425 0.77 -2.4
84,273 - ABIE40_RS00425 0.77 -0.6
84,285 + ABIE40_RS00425 0.78 -0.6
84,286 - ABIE40_RS00425 0.78 -0.5
84,307 + ABIE40_RS00425 0.80 +0.0
84,308 - ABIE40_RS00425 0.80 +0.1
84,308 - ABIE40_RS00425 0.80 -0.4
84,326 - ABIE40_RS00425 0.82 +3.0
84,326 - ABIE40_RS00425 0.82 -0.3
84,478 + +0.2
84,478 + +0.8
84,479 - -0.9
84,479 - +0.8
84,479 - -0.1
84,487 - +0.8
84,487 - +0.7
84,487 - +0.5
84,511 + -0.1
84,512 - +1.1
84,512 - +1.1
84,567 + +0.5
84,577 - -0.9
84,577 - +0.4
84,579 + -0.5
84,580 - -0.7
84,580 - -0.3
84,580 - +0.6
84,600 - -0.8
84,600 - -0.6
84,655 + ABIE40_RS00430 0.10 -0.3
84,655 + ABIE40_RS00430 0.10 -0.6
84,655 + ABIE40_RS00430 0.10 +0.1
84,655 + ABIE40_RS00430 0.10 +0.0
84,738 + ABIE40_RS00430 0.34 +0.6
84,739 - ABIE40_RS00430 0.34 +0.3
84,739 - ABIE40_RS00430 0.34 -1.8
84,739 - ABIE40_RS00430 0.34 +0.1
84,873 + ABIE40_RS00430 0.72 -0.2
84,873 + ABIE40_RS00430 0.72 +1.1
84,874 - ABIE40_RS00430 0.72 -1.5
84,891 + ABIE40_RS00430 0.77 +0.2
84,892 - ABIE40_RS00430 0.77 +0.5
84,969 + +0.7
85,100 + ABIE40_RS00435 0.23 +1.3
85,100 + ABIE40_RS00435 0.23 +0.6
85,101 - ABIE40_RS00435 0.23 +0.3
85,101 - ABIE40_RS00435 0.23 -0.2
85,101 - ABIE40_RS00435 0.23 +1.5
85,101 - ABIE40_RS00435 0.23 +0.6
85,117 + ABIE40_RS00435 0.31 +0.3
85,117 + ABIE40_RS00435 0.31 -0.3
85,118 - ABIE40_RS00435 0.31 +0.5
85,118 - ABIE40_RS00435 0.31 -0.7
85,195 + ABIE40_RS00435 0.69 +0.3
85,195 + ABIE40_RS00435 0.69 +0.2
85,359 + -0.6
85,359 + +0.2
85,359 + -1.0
85,360 - -0.3
85,360 - +1.0
85,411 + +2.2
85,412 - +0.1
85,432 + +0.1
85,432 + -0.2
85,433 - -0.2
85,434 + +0.4
85,434 + +0.3
85,434 + -1.7
85,434 + -0.2
85,434 + +0.4
85,435 - +0.3
85,435 - -0.8
85,435 - -1.9
85,459 + -0.2
85,459 + -0.2
85,603 + ABIE40_RS00440 0.15 +0.5
85,603 + ABIE40_RS00440 0.15 +0.3
85,604 - ABIE40_RS00440 0.15 -0.2
85,733 + ABIE40_RS00440 0.28 +0.1
85,888 + ABIE40_RS00440 0.44 -0.1
85,889 - ABIE40_RS00440 0.44 +0.4
85,889 - ABIE40_RS00440 0.44 +0.2
85,926 - ABIE40_RS00440 0.48 -0.9
85,926 - ABIE40_RS00440 0.48 +0.7
85,971 + ABIE40_RS00440 0.52 +1.6
86,027 + ABIE40_RS00440 0.58 +0.6
86,027 + ABIE40_RS00440 0.58 -0.4
86,027 + ABIE40_RS00440 0.58 +1.4
86,027 + ABIE40_RS00440 0.58 +0.4
86,027 + ABIE40_RS00440 0.58 -0.1
86,027 + ABIE40_RS00440 0.58 +1.9
86,027 + ABIE40_RS00440 0.58 -0.3
86,028 - ABIE40_RS00440 0.58 +0.2
86,028 - ABIE40_RS00440 0.58 -1.4
86,028 - ABIE40_RS00440 0.58 -0.4
86,071 + ABIE40_RS00440 0.62 +0.1
86,071 + ABIE40_RS00440 0.62 +0.3
86,117 + ABIE40_RS00440 0.67 +0.3
86,117 + ABIE40_RS00440 0.67 -1.1
86,118 - ABIE40_RS00440 0.67 -2.0

Or see this region's nucleotide sequence