Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28495 and ABID97_RS28500 overlap by 1 nucleotides ABID97_RS28500 and ABID97_RS28505 are separated by 10 nucleotides ABID97_RS28505 and ABID97_RS28510 are separated by 16 nucleotides
ABID97_RS28495: ABID97_RS28495 - FAD binding domain-containing protein, at 618,597 to 619,460
_RS28495
ABID97_RS28500: ABID97_RS28500 - SRPBCC domain-containing protein, at 619,460 to 620,287
_RS28500
ABID97_RS28505: ABID97_RS28505 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 620,298 to 622,598
_RS28505
ABID97_RS28510: ABID97_RS28510 - tripartite tricarboxylate transporter substrate binding protein, at 622,615 to 623,589
_RS28510
Position (kb) 620
621
622
623 Strain fitness (log2 ratio) -1
0
1
2 at 619.555 kb on - strand, within ABID97_RS28500 at 619.785 kb on - strand, within ABID97_RS28500 at 620.039 kb on - strand, within ABID97_RS28500 at 620.093 kb on + strand, within ABID97_RS28500 at 620.094 kb on - strand, within ABID97_RS28500 at 620.094 kb on - strand, within ABID97_RS28500 at 620.094 kb on - strand, within ABID97_RS28500 at 620.575 kb on + strand, within ABID97_RS28505 at 620.575 kb on + strand, within ABID97_RS28505 at 620.662 kb on + strand, within ABID97_RS28505 at 620.663 kb on - strand, within ABID97_RS28505 at 620.721 kb on + strand, within ABID97_RS28505 at 620.915 kb on - strand, within ABID97_RS28505 at 621.168 kb on + strand, within ABID97_RS28505 at 621.332 kb on + strand, within ABID97_RS28505 at 621.333 kb on - strand, within ABID97_RS28505 at 621.540 kb on + strand, within ABID97_RS28505 at 621.540 kb on + strand, within ABID97_RS28505 at 621.630 kb on + strand, within ABID97_RS28505 at 621.653 kb on + strand, within ABID97_RS28505 at 622.004 kb on + strand, within ABID97_RS28505 at 622.005 kb on - strand, within ABID97_RS28505 at 622.123 kb on + strand, within ABID97_RS28505 at 622.549 kb on + strand at 622.550 kb on - strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.746 kb on + strand, within ABID97_RS28510 at 622.826 kb on + strand, within ABID97_RS28510 at 622.826 kb on + strand, within ABID97_RS28510 at 622.827 kb on - strand, within ABID97_RS28510 at 622.827 kb on - strand, within ABID97_RS28510 at 623.040 kb on - strand, within ABID97_RS28510 at 623.126 kb on + strand, within ABID97_RS28510 at 623.133 kb on - strand at 623.210 kb on + strand, within ABID97_RS28510 at 623.210 kb on + strand, within ABID97_RS28510 at 623.210 kb on + strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.355 kb on - strand, within ABID97_RS28510 at 623.447 kb on + strand, within ABID97_RS28510 at 623.522 kb on - strand at 623.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 619,555 - ABID97_RS28500 0.11 -0.0 619,785 - ABID97_RS28500 0.39 -0.4 620,039 - ABID97_RS28500 0.70 -0.7 620,093 + ABID97_RS28500 0.76 +0.8 620,094 - ABID97_RS28500 0.77 +0.4 620,094 - ABID97_RS28500 0.77 +0.6 620,094 - ABID97_RS28500 0.77 -0.2 620,575 + ABID97_RS28505 0.12 -0.4 620,575 + ABID97_RS28505 0.12 +0.8 620,662 + ABID97_RS28505 0.16 -0.2 620,663 - ABID97_RS28505 0.16 -0.6 620,721 + ABID97_RS28505 0.18 +0.1 620,915 - ABID97_RS28505 0.27 +0.3 621,168 + ABID97_RS28505 0.38 +1.2 621,332 + ABID97_RS28505 0.45 +0.1 621,333 - ABID97_RS28505 0.45 -0.5 621,540 + ABID97_RS28505 0.54 -0.7 621,540 + ABID97_RS28505 0.54 +0.0 621,630 + ABID97_RS28505 0.58 -0.4 621,653 + ABID97_RS28505 0.59 -0.3 622,004 + ABID97_RS28505 0.74 +0.0 622,005 - ABID97_RS28505 0.74 -0.2 622,123 + ABID97_RS28505 0.79 -0.0 622,549 + -0.5 622,550 - -0.2 622,616 + -0.0 622,616 + -0.5 622,616 + -0.2 622,616 + -0.2 622,746 + ABID97_RS28510 0.13 -0.1 622,826 + ABID97_RS28510 0.22 -0.4 622,826 + ABID97_RS28510 0.22 -0.1 622,827 - ABID97_RS28510 0.22 -0.3 622,827 - ABID97_RS28510 0.22 +0.5 623,040 - ABID97_RS28510 0.44 -0.3 623,126 + ABID97_RS28510 0.52 -0.6 623,133 - +1.8 623,210 + ABID97_RS28510 0.61 -0.2 623,210 + ABID97_RS28510 0.61 -1.3 623,210 + ABID97_RS28510 0.61 -0.2 623,211 - ABID97_RS28510 0.61 +0.4 623,211 - ABID97_RS28510 0.61 -0.4 623,211 - ABID97_RS28510 0.61 +0.5 623,355 - ABID97_RS28510 0.76 +0.5 623,447 + ABID97_RS28510 0.85 -0.4 623,522 - -0.9 623,537 - +0.6
Or see this region's nucleotide sequence