Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28440 and ABID97_RS28445 are separated by 26 nucleotides ABID97_RS28445 and ABID97_RS28450 are separated by 55 nucleotides ABID97_RS28450 and ABID97_RS28455 are separated by 181 nucleotides
ABID97_RS28440: ABID97_RS28440 - PrpF domain-containing protein, at 607,473 to 608,618
_RS28440
ABID97_RS28445: ABID97_RS28445 - SDR family oxidoreductase, at 608,645 to 609,424
_RS28445
ABID97_RS28450: ABID97_RS28450 - helix-turn-helix transcriptional regulator, at 609,480 to 610,274
_RS28450
ABID97_RS28455: ABID97_RS28455 - FUSC family protein, at 610,456 to 612,474
_RS28455
Position (kb) 609
610
611 Strain fitness (log2 ratio) -1
0
1
2 at 608.587 kb on - strand at 608.657 kb on - strand at 608.759 kb on + strand, within ABID97_RS28445 at 608.760 kb on - strand, within ABID97_RS28445 at 608.886 kb on - strand, within ABID97_RS28445 at 608.999 kb on - strand, within ABID97_RS28445 at 609.082 kb on + strand, within ABID97_RS28445 at 609.552 kb on - strand at 609.574 kb on + strand, within ABID97_RS28450 at 609.574 kb on + strand, within ABID97_RS28450 at 609.586 kb on + strand, within ABID97_RS28450 at 609.901 kb on + strand, within ABID97_RS28450 at 610.012 kb on + strand, within ABID97_RS28450 at 610.238 kb on - strand at 610.376 kb on + strand at 610.588 kb on + strand at 610.968 kb on - strand, within ABID97_RS28455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 608,587 - +0.1 608,657 - +0.0 608,759 + ABID97_RS28445 0.15 -0.1 608,760 - ABID97_RS28445 0.15 -0.5 608,886 - ABID97_RS28445 0.31 +0.2 608,999 - ABID97_RS28445 0.45 -0.3 609,082 + ABID97_RS28445 0.56 -0.1 609,552 - +2.5 609,574 + ABID97_RS28450 0.12 -0.5 609,574 + ABID97_RS28450 0.12 -0.3 609,586 + ABID97_RS28450 0.13 +0.9 609,901 + ABID97_RS28450 0.53 -0.3 610,012 + ABID97_RS28450 0.67 +0.3 610,238 - -0.0 610,376 + +0.6 610,588 + -0.2 610,968 - ABID97_RS28455 0.25 -1.1
Or see this region's nucleotide sequence