Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27465 and ABID97_RS27470 are separated by 43 nucleotides ABID97_RS27470 and ABID97_RS27475 are separated by 158 nucleotides
ABID97_RS27465: ABID97_RS27465 - malonate decarboxylase subunit alpha, at 409,292 to 410,974
_RS27465
ABID97_RS27470: ABID97_RS27470 - SLC13 family permease, at 411,018 to 412,391
_RS27470
ABID97_RS27475: ABID97_RS27475 - LysR family transcriptional regulator, at 412,550 to 413,464
_RS27475
Position (kb) 411
412
413 Strain fitness (log2 ratio) -1
0
1 at 410.152 kb on - strand, within ABID97_RS27465 at 410.229 kb on + strand, within ABID97_RS27465 at 410.229 kb on + strand, within ABID97_RS27465 at 410.487 kb on + strand, within ABID97_RS27465 at 411.080 kb on - strand at 411.080 kb on - strand at 411.412 kb on + strand, within ABID97_RS27470 at 411.413 kb on - strand, within ABID97_RS27470 at 411.925 kb on + strand, within ABID97_RS27470 at 411.926 kb on - strand, within ABID97_RS27470 at 412.003 kb on + strand, within ABID97_RS27470 at 412.367 kb on - strand at 412.411 kb on + strand at 412.415 kb on + strand at 412.443 kb on - strand at 412.443 kb on - strand at 412.447 kb on - strand at 412.447 kb on - strand at 412.902 kb on + strand, within ABID97_RS27475 at 413.146 kb on - strand, within ABID97_RS27475
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 410,152 - ABID97_RS27465 0.51 -0.5 410,229 + ABID97_RS27465 0.56 +0.9 410,229 + ABID97_RS27465 0.56 -0.9 410,487 + ABID97_RS27465 0.71 +0.1 411,080 - +0.0 411,080 - -1.0 411,412 + ABID97_RS27470 0.29 -0.2 411,413 - ABID97_RS27470 0.29 +0.9 411,925 + ABID97_RS27470 0.66 +0.2 411,926 - ABID97_RS27470 0.66 +0.5 412,003 + ABID97_RS27470 0.72 +0.3 412,367 - -0.1 412,411 + +0.0 412,415 + -0.0 412,443 - +0.2 412,443 - -0.2 412,447 - +0.4 412,447 - +0.1 412,902 + ABID97_RS27475 0.38 +0.2 413,146 - ABID97_RS27475 0.65 +0.6
Or see this region's nucleotide sequence