Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26680

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26675 and ABID97_RS26680 overlap by 4 nucleotidesABID97_RS26680 and ABID97_RS26685 are separated by 31 nucleotides ABID97_RS26675: ABID97_RS26675 - DNA repair exonuclease, at 256,547 to 257,707 _RS26675 ABID97_RS26680: ABID97_RS26680 - AAA family ATPase, at 257,704 to 260,367 _RS26680 ABID97_RS26685: ABID97_RS26685 - LysR substrate-binding domain-containing protein, at 260,399 to 261,334 _RS26685 Position (kb) 257 258 259 260 261Strain fitness (log2 ratio) -2 -1 0 1at 256.921 kb on - strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.961 kb on + strand, within ABID97_RS26675at 256.962 kb on - strand, within ABID97_RS26675at 260.008 kb on + strand, within ABID97_RS26680at 260.008 kb on + strand, within ABID97_RS26680at 260.170 kb on + strandat 260.383 kb on - strandat 260.730 kb on + strand, within ABID97_RS26685at 261.126 kb on + strand, within ABID97_RS26685at 261.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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256,921 - ABID97_RS26675 0.32 -0.3
256,961 + ABID97_RS26675 0.36 -0.1
256,961 + ABID97_RS26675 0.36 +0.9
256,961 + ABID97_RS26675 0.36 +0.6
256,961 + ABID97_RS26675 0.36 -2.0
256,962 - ABID97_RS26675 0.36 -0.1
260,008 + ABID97_RS26680 0.86 -0.1
260,008 + ABID97_RS26680 0.86 +1.2
260,170 + -0.0
260,383 - +0.0
260,730 + ABID97_RS26685 0.35 -0.1
261,126 + ABID97_RS26685 0.78 -0.4
261,303 + +1.1

Or see this region's nucleotide sequence