Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26155 and ABID97_RS26160 are separated by 59 nucleotides ABID97_RS26160 and ABID97_RS26165 are separated by 48 nucleotides ABID97_RS26165 and ABID97_RS26170 overlap by 11 nucleotides
ABID97_RS26155: ABID97_RS26155 - NADH:flavin oxidoreductase/NADH oxidase, at 157,052 to 158,221
_RS26155
ABID97_RS26160: ABID97_RS26160 - nuclear transport factor 2 family protein, at 158,281 to 158,670
_RS26160
ABID97_RS26165: ABID97_RS26165 - NAD(P)H-binding protein, at 158,719 to 159,366
_RS26165
ABID97_RS26170: ABID97_RS26170 - ATP-binding protein, at 159,356 to 161,425
_RS26170
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1
2
3 at 157.893 kb on - strand, within ABID97_RS26155 at 158.297 kb on - strand at 158.297 kb on - strand at 158.297 kb on - strand at 158.308 kb on + strand at 158.338 kb on + strand, within ABID97_RS26160 at 158.642 kb on - strand at 158.642 kb on - strand at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.032 kb on - strand, within ABID97_RS26165 at 159.080 kb on - strand, within ABID97_RS26165 at 159.398 kb on + strand at 159.399 kb on - strand at 160.083 kb on + strand, within ABID97_RS26170 at 160.084 kb on - strand, within ABID97_RS26170 at 160.084 kb on - strand, within ABID97_RS26170 at 160.196 kb on + strand, within ABID97_RS26170 at 160.196 kb on + strand, within ABID97_RS26170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 157,893 - ABID97_RS26155 0.72 -0.0 158,297 - +0.3 158,297 - -0.0 158,297 - -1.2 158,308 + -1.0 158,338 + ABID97_RS26160 0.15 -0.9 158,642 - +0.9 158,642 - -0.8 159,031 + ABID97_RS26165 0.48 -0.2 159,031 + ABID97_RS26165 0.48 -1.3 159,031 + ABID97_RS26165 0.48 +0.1 159,031 + ABID97_RS26165 0.48 -0.4 159,032 - ABID97_RS26165 0.48 +0.4 159,080 - ABID97_RS26165 0.56 +3.4 159,398 + -0.8 159,399 - -0.5 160,083 + ABID97_RS26170 0.35 +0.6 160,084 - ABID97_RS26170 0.35 -0.8 160,084 - ABID97_RS26170 0.35 +2.2 160,196 + ABID97_RS26170 0.41 -0.4 160,196 + ABID97_RS26170 0.41 -0.6
Or see this region's nucleotide sequence