Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21765

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21760 and ABID97_RS21765 are separated by 3 nucleotidesABID97_RS21765 and ABID97_RS21770 overlap by 17 nucleotides ABID97_RS21760: ABID97_RS21760 - peptide chain release factor 2, at 4,498,068 to 4,499,172 _RS21760 ABID97_RS21765: ABID97_RS21765 - HAD family phosphatase, at 4,499,176 to 4,499,865 _RS21765 ABID97_RS21770: ABID97_RS21770 - aminopeptidase N, at 4,499,849 to 4,502,557 _RS21770 Position (kb) 4499 4500Strain fitness (log2 ratio) -2 -1 0 1 2at 4499.809 kb on + strandat 4499.903 kb on + strandat 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.299 kb on + strand, within ABID97_RS21770at 4500.431 kb on + strand, within ABID97_RS21770at 4500.701 kb on + strand, within ABID97_RS21770at 4500.740 kb on + strand, within ABID97_RS21770at 4500.773 kb on + strand, within ABID97_RS21770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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4,499,809 + -2.7
4,499,903 + +2.0
4,500,266 + ABID97_RS21770 0.15 +1.6
4,500,266 + ABID97_RS21770 0.15 +0.6
4,500,266 + ABID97_RS21770 0.15 +1.4
4,500,266 + ABID97_RS21770 0.15 +1.5
4,500,266 + ABID97_RS21770 0.15 +1.5
4,500,299 + ABID97_RS21770 0.17 +1.8
4,500,431 + ABID97_RS21770 0.21 +2.5
4,500,701 + ABID97_RS21770 0.31 +1.4
4,500,740 + ABID97_RS21770 0.33 +1.6
4,500,773 + ABID97_RS21770 0.34 +2.2

Or see this region's nucleotide sequence