Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21305 and ABID97_RS21310 are separated by 123 nucleotides ABID97_RS21310 and ABID97_RS21315 overlap by 4 nucleotides ABID97_RS21315 and ABID97_RS21320 are separated by 4 nucleotides ABID97_RS21320 and ABID97_RS21325 are separated by 64 nucleotides
ABID97_RS21305: ABID97_RS21305 - OmpA family protein, at 4,397,611 to 4,398,162
_RS21305
ABID97_RS21310: ABID97_RS21310 - gamma-glutamylcyclotransferase, at 4,398,286 to 4,398,990
_RS21310
ABID97_RS21315: ABID97_RS21315 - superoxide dismutase family protein, at 4,398,987 to 4,399,529
_RS21315
ABID97_RS21320: ABID97_RS21320 - nucleotidyltransferase family protein, at 4,399,534 to 4,400,109
_RS21320
ABID97_RS21325: ABID97_RS21325 - pyridoxamine 5'-phosphate oxidase, at 4,400,174 to 4,400,830
_RS21325
Position (kb) 4398
4399
4400 Strain fitness (log2 ratio) -2
-1
0
1 at 4398.198 kb on + strand at 4398.198 kb on + strand at 4398.199 kb on - strand at 4398.199 kb on - strand at 4398.199 kb on - strand at 4398.199 kb on - strand at 4398.761 kb on - strand, within ABID97_RS21310 at 4398.941 kb on + strand at 4398.941 kb on + strand at 4398.942 kb on - strand at 4398.942 kb on - strand at 4398.943 kb on + strand at 4398.944 kb on - strand at 4398.944 kb on - strand at 4400.118 kb on + strand at 4400.118 kb on + strand at 4400.119 kb on - strand at 4400.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 4,398,198 + +0.9 4,398,198 + +0.1 4,398,199 - -1.8 4,398,199 - +0.5 4,398,199 - -0.3 4,398,199 - +0.4 4,398,761 - ABID97_RS21310 0.67 -0.3 4,398,941 + +0.3 4,398,941 + +0.2 4,398,942 - -0.2 4,398,942 - -0.0 4,398,943 + -0.2 4,398,944 - +0.1 4,398,944 - -1.5 4,400,118 + -0.0 4,400,118 + +0.5 4,400,119 - -1.0 4,400,119 - +0.1
Or see this region's nucleotide sequence