Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20400 and ABID97_RS20405 overlap by 8 nucleotides ABID97_RS20405 and ABID97_RS20410 are separated by 75 nucleotides ABID97_RS20410 and ABID97_RS20415 are separated by 21 nucleotides ABID97_RS20415 and ABID97_RS20420 are separated by 7 nucleotides
ABID97_RS20400: ABID97_RS20400 - efflux transporter outer membrane subunit, at 4,211,692 to 4,213,170
_RS20400
ABID97_RS20405: ABID97_RS20405 - MarR family transcriptional regulator, at 4,213,163 to 4,213,696
_RS20405
ABID97_RS20410: ABID97_RS20410 - ABC transporter transmembrane domain-containing protein, at 4,213,772 to 4,215,556
_RS20410
ABID97_RS20415: ABID97_RS20415 - DUF1178 family protein, at 4,215,578 to 4,216,045
_RS20415
ABID97_RS20420: ABID97_RS20420 - NUDIX hydrolase, at 4,216,053 to 4,216,661
_RS20420
Position (kb) 4213
4214
4215
4216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4212.786 kb on - strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.791 kb on + strand, within ABID97_RS20400 at 4212.792 kb on - strand, within ABID97_RS20400 at 4212.792 kb on - strand, within ABID97_RS20400 at 4212.792 kb on - strand, within ABID97_RS20400 at 4212.792 kb on - strand, within ABID97_RS20400 at 4212.792 kb on - strand, within ABID97_RS20400 at 4213.494 kb on + strand, within ABID97_RS20405 at 4213.495 kb on - strand, within ABID97_RS20405 at 4213.591 kb on - strand, within ABID97_RS20405 at 4213.614 kb on + strand, within ABID97_RS20405 at 4213.615 kb on - strand, within ABID97_RS20405 at 4213.615 kb on - strand, within ABID97_RS20405 at 4213.629 kb on + strand, within ABID97_RS20405 at 4214.054 kb on + strand, within ABID97_RS20410 at 4214.054 kb on + strand, within ABID97_RS20410 at 4214.054 kb on + strand, within ABID97_RS20410 at 4214.055 kb on - strand, within ABID97_RS20410 at 4214.055 kb on - strand, within ABID97_RS20410 at 4214.056 kb on + strand, within ABID97_RS20410 at 4214.057 kb on - strand, within ABID97_RS20410 at 4214.200 kb on - strand, within ABID97_RS20410 at 4214.307 kb on + strand, within ABID97_RS20410 at 4214.308 kb on - strand, within ABID97_RS20410 at 4214.454 kb on - strand, within ABID97_RS20410 at 4214.454 kb on - strand, within ABID97_RS20410 at 4214.598 kb on - strand, within ABID97_RS20410 at 4214.663 kb on + strand, within ABID97_RS20410 at 4214.708 kb on + strand, within ABID97_RS20410 at 4214.708 kb on + strand, within ABID97_RS20410 at 4214.709 kb on - strand, within ABID97_RS20410 at 4214.709 kb on - strand, within ABID97_RS20410 at 4214.709 kb on - strand, within ABID97_RS20410 at 4214.858 kb on + strand, within ABID97_RS20410 at 4214.859 kb on - strand, within ABID97_RS20410 at 4214.984 kb on + strand, within ABID97_RS20410 at 4214.987 kb on + strand, within ABID97_RS20410 at 4214.988 kb on - strand, within ABID97_RS20410 at 4214.988 kb on - strand, within ABID97_RS20410 at 4215.215 kb on + strand, within ABID97_RS20410 at 4215.215 kb on + strand, within ABID97_RS20410 at 4215.521 kb on + strand at 4215.579 kb on + strand at 4215.705 kb on + strand, within ABID97_RS20415 at 4215.706 kb on - strand, within ABID97_RS20415 at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.055 kb on - strand at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.325 kb on - strand, within ABID97_RS20420 at 4216.525 kb on + strand, within ABID97_RS20420 at 4216.526 kb on - strand, within ABID97_RS20420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 4,212,786 - ABID97_RS20400 0.74 -0.2 4,212,791 + ABID97_RS20400 0.74 -0.1 4,212,791 + ABID97_RS20400 0.74 -1.2 4,212,791 + ABID97_RS20400 0.74 +1.2 4,212,791 + ABID97_RS20400 0.74 +1.2 4,212,791 + ABID97_RS20400 0.74 -0.2 4,212,791 + ABID97_RS20400 0.74 +0.5 4,212,791 + ABID97_RS20400 0.74 +1.0 4,212,792 - ABID97_RS20400 0.74 -0.2 4,212,792 - ABID97_RS20400 0.74 +0.7 4,212,792 - ABID97_RS20400 0.74 +0.1 4,212,792 - ABID97_RS20400 0.74 +0.4 4,212,792 - ABID97_RS20400 0.74 +0.1 4,213,494 + ABID97_RS20405 0.62 +0.8 4,213,495 - ABID97_RS20405 0.62 -0.8 4,213,591 - ABID97_RS20405 0.80 -1.0 4,213,614 + ABID97_RS20405 0.84 +1.2 4,213,615 - ABID97_RS20405 0.85 -0.1 4,213,615 - ABID97_RS20405 0.85 -0.8 4,213,629 + ABID97_RS20405 0.87 +0.8 4,214,054 + ABID97_RS20410 0.16 -1.9 4,214,054 + ABID97_RS20410 0.16 +0.8 4,214,054 + ABID97_RS20410 0.16 +0.2 4,214,055 - ABID97_RS20410 0.16 -0.2 4,214,055 - ABID97_RS20410 0.16 +0.9 4,214,056 + ABID97_RS20410 0.16 -0.4 4,214,057 - ABID97_RS20410 0.16 -0.6 4,214,200 - ABID97_RS20410 0.24 -0.1 4,214,307 + ABID97_RS20410 0.30 -0.7 4,214,308 - ABID97_RS20410 0.30 -1.1 4,214,454 - ABID97_RS20410 0.38 -2.6 4,214,454 - ABID97_RS20410 0.38 +0.2 4,214,598 - ABID97_RS20410 0.46 -1.4 4,214,663 + ABID97_RS20410 0.50 -0.2 4,214,708 + ABID97_RS20410 0.52 +1.2 4,214,708 + ABID97_RS20410 0.52 +0.1 4,214,709 - ABID97_RS20410 0.52 +0.4 4,214,709 - ABID97_RS20410 0.52 +1.0 4,214,709 - ABID97_RS20410 0.52 -0.1 4,214,858 + ABID97_RS20410 0.61 -0.9 4,214,859 - ABID97_RS20410 0.61 -2.0 4,214,984 + ABID97_RS20410 0.68 +0.1 4,214,987 + ABID97_RS20410 0.68 -1.0 4,214,988 - ABID97_RS20410 0.68 +0.2 4,214,988 - ABID97_RS20410 0.68 -0.0 4,215,215 + ABID97_RS20410 0.81 -0.4 4,215,215 + ABID97_RS20410 0.81 -0.3 4,215,521 + -0.5 4,215,579 + +0.4 4,215,705 + ABID97_RS20415 0.27 -0.2 4,215,706 - ABID97_RS20415 0.27 -0.2 4,216,029 - +1.8 4,216,029 - +0.1 4,216,029 - -0.3 4,216,029 - -0.3 4,216,055 - +0.1 4,216,324 + ABID97_RS20420 0.44 -0.1 4,216,324 + ABID97_RS20420 0.44 -0.0 4,216,324 + ABID97_RS20420 0.44 +0.2 4,216,325 - ABID97_RS20420 0.45 -0.2 4,216,525 + ABID97_RS20420 0.78 -0.3 4,216,526 - ABID97_RS20420 0.78 +0.2
Or see this region's nucleotide sequence