Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18020 and ABID97_RS18025 are separated by 13 nucleotides ABID97_RS18025 and ABID97_RS18030 overlap by 1 nucleotides ABID97_RS18030 and ABID97_RS18035 are separated by 16 nucleotides
ABID97_RS18020: ABID97_RS18020 - FAD-dependent oxidoreductase, at 3,723,083 to 3,724,171
_RS18020
ABID97_RS18025: ABID97_RS18025 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,724,185 to 3,725,108
_RS18025
ABID97_RS18030: ABID97_RS18030 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 3,725,108 to 3,725,857
_RS18030
ABID97_RS18035: ABID97_RS18035 - PLP-dependent aminotransferase family protein, at 3,725,874 to 3,727,322
_RS18035
Position (kb)
3724
3725
3726 Strain fitness (log2 ratio)
-1
0
1
2 at 3723.308 kb on + strand, within ABID97_RS18020 at 3723.614 kb on + strand, within ABID97_RS18020 at 3724.762 kb on - strand, within ABID97_RS18025 at 3724.891 kb on - strand, within ABID97_RS18025 at 3725.091 kb on + strand at 3725.092 kb on - strand at 3725.092 kb on - strand at 3725.107 kb on - strand at 3725.666 kb on + strand, within ABID97_RS18030 at 3725.760 kb on - strand, within ABID97_RS18030 at 3725.760 kb on - strand, within ABID97_RS18030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 3,723,308 + ABID97_RS18020 0.21 +0.3 3,723,614 + ABID97_RS18020 0.49 +0.1 3,724,762 - ABID97_RS18025 0.62 +0.2 3,724,891 - ABID97_RS18025 0.76 -0.4 3,725,091 + -0.2 3,725,092 - -0.4 3,725,092 - -0.4 3,725,107 - +0.3 3,725,666 + ABID97_RS18030 0.74 +1.8 3,725,760 - ABID97_RS18030 0.87 +0.6 3,725,760 - ABID97_RS18030 0.87 +1.2
Or see this region's nucleotide sequence