Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13295

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13290 and ABID97_RS13295 are separated by 33 nucleotidesABID97_RS13295 and ABID97_RS13300 overlap by 4 nucleotides ABID97_RS13290: ABID97_RS13290 - amino acid ABC transporter substrate-binding protein, at 2,768,767 to 2,769,786 _RS13290 ABID97_RS13295: ABID97_RS13295 - amino acid ABC transporter permease, at 2,769,820 to 2,770,992 _RS13295 ABID97_RS13300: ABID97_RS13300 - amino acid ABC transporter permease, at 2,770,989 to 2,772,080 _RS13300 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -1 0 1at 2769.403 kb on + strand, within ABID97_RS13290at 2769.404 kb on - strand, within ABID97_RS13290at 2769.524 kb on - strand, within ABID97_RS13290at 2769.886 kb on + strandat 2769.886 kb on + strandat 2769.926 kb on - strandat 2770.247 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.310 kb on - strand, within ABID97_RS13295at 2770.960 kb on + strandat 2770.961 kb on - strandat 2771.267 kb on + strand, within ABID97_RS13300

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,769,403 + ABID97_RS13290 0.62 +1.0
2,769,404 - ABID97_RS13290 0.62 +0.1
2,769,524 - ABID97_RS13290 0.74 -0.2
2,769,886 + -1.2
2,769,886 + +1.0
2,769,926 - -0.2
2,770,247 - ABID97_RS13295 0.36 +0.0
2,770,310 - ABID97_RS13295 0.42 +0.2
2,770,310 - ABID97_RS13295 0.42 +1.6
2,770,310 - ABID97_RS13295 0.42 -0.4
2,770,960 + -0.3
2,770,961 - -0.0
2,771,267 + ABID97_RS13300 0.25 -0.5

Or see this region's nucleotide sequence