Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12970

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12960 and ABID97_RS12965 are separated by 38 nucleotidesABID97_RS12965 and ABID97_RS12970 overlap by 23 nucleotidesABID97_RS12970 and ABID97_RS12975 overlap by 4 nucleotides ABID97_RS12960: ABID97_RS12960 - type VI secretion system tip protein TssI/VgrG, at 2,689,815 to 2,693,045 _RS12960 ABID97_RS12965: ABID97_RS12965 - DUF2169 domain-containing protein, at 2,693,084 to 2,694,040 _RS12965 ABID97_RS12970: ABID97_RS12970 - pentapeptide repeat-containing protein, at 2,694,018 to 2,696,165 _RS12970 ABID97_RS12975: ABID97_RS12975 - pentapeptide repeat-containing protein, at 2,696,162 to 2,697,259 _RS12975 Position (kb) 2694 2695 2696 2697Strain fitness (log2 ratio) -1 0 1at 2693.712 kb on - strand, within ABID97_RS12965at 2694.657 kb on + strand, within ABID97_RS12970at 2694.658 kb on - strand, within ABID97_RS12970at 2694.795 kb on + strand, within ABID97_RS12970at 2696.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,693,712 - ABID97_RS12965 0.66 -0.0
2,694,657 + ABID97_RS12970 0.30 +0.3
2,694,658 - ABID97_RS12970 0.30 -0.3
2,694,795 + ABID97_RS12970 0.36 -0.4
2,696,070 + -1.0

Or see this region's nucleotide sequence