Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12615

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12605 and ABID97_RS12610 are separated by 133 nucleotidesABID97_RS12610 and ABID97_RS12615 overlap by 22 nucleotidesABID97_RS12615 and ABID97_RS12620 overlap by 4 nucleotidesABID97_RS12620 and ABID97_RS12625 overlap by 4 nucleotides ABID97_RS12605: ABID97_RS12605 - sigma-54-dependent Fis family transcriptional regulator, at 2,616,470 to 2,618,515 _RS12605 ABID97_RS12610: ABID97_RS12610 - flavoprotein, at 2,618,649 to 2,619,194 _RS12610 ABID97_RS12615: ABID97_RS12615 - DUF6513 domain-containing protein, at 2,619,173 to 2,620,657 _RS12615 ABID97_RS12620: ABID97_RS12620 - DUF447 domain-containing protein, at 2,620,654 to 2,621,235 _RS12620 ABID97_RS12625: ABID97_RS12625 - (5-formylfuran-3-yl)methyl phosphate synthase, at 2,621,232 to 2,621,936 _RS12625 Position (kb) 2619 2620 2621Strain fitness (log2 ratio) -1 0 1at 2618.850 kb on + strand, within ABID97_RS12610at 2619.971 kb on + strand, within ABID97_RS12615at 2620.349 kb on + strand, within ABID97_RS12615at 2620.437 kb on - strand, within ABID97_RS12615at 2621.122 kb on + strand, within ABID97_RS12620

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,618,850 + ABID97_RS12610 0.37 -0.2
2,619,971 + ABID97_RS12615 0.54 +0.1
2,620,349 + ABID97_RS12615 0.79 +0.3
2,620,437 - ABID97_RS12615 0.85 +0.5
2,621,122 + ABID97_RS12620 0.80 +0.1

Or see this region's nucleotide sequence