Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10895

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10890 and ABID97_RS10895 are separated by 21 nucleotidesABID97_RS10895 and ABID97_RS10900 are separated by 89 nucleotidesABID97_RS10900 and ABID97_RS10905 overlap by 8 nucleotides ABID97_RS10890: ABID97_RS10890 - homoserine dehydrogenase, at 2,255,214 to 2,256,536 _RS10890 ABID97_RS10895: ABID97_RS10895 - threonine synthase, at 2,256,558 to 2,257,973 _RS10895 ABID97_RS10900: ABID97_RS10900 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 2,258,063 to 2,258,608 _RS10900 ABID97_RS10905: ABID97_RS10905 - gephyrin-like molybdotransferase Glp, at 2,258,601 to 2,259,878 _RS10905 Position (kb) 2256 2257 2258Strain fitness (log2 ratio) -1 0 1at 2256.276 kb on + strand, within ABID97_RS10890at 2258.025 kb on + strandat 2258.026 kb on - strandat 2258.026 kb on - strandat 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.585 kb on + strandat 2258.585 kb on + strandat 2258.586 kb on - strandat 2258.586 kb on - strandat 2258.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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2,256,276 + ABID97_RS10890 0.80 -0.4
2,258,025 + -0.8
2,258,026 - +0.2
2,258,026 - -0.2
2,258,216 + ABID97_RS10900 0.28 -0.8
2,258,216 + ABID97_RS10900 0.28 -0.2
2,258,216 + ABID97_RS10900 0.28 +0.3
2,258,216 + ABID97_RS10900 0.28 -0.1
2,258,585 + -0.3
2,258,585 + +0.7
2,258,586 - +0.0
2,258,586 - -0.3
2,258,586 - +0.2

Or see this region's nucleotide sequence