Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09415 and ABID97_RS09420 are separated by 33 nucleotides ABID97_RS09420 and ABID97_RS09425 are separated by 16 nucleotides ABID97_RS09425 and ABID97_RS09430 are separated by 22 nucleotides ABID97_RS09430 and ABID97_RS09435 overlap by 4 nucleotides ABID97_RS09435 and ABID97_RS09440 overlap by 4 nucleotides
ABID97_RS09415: ABID97_RS09415 - VWA domain-containing protein, at 1,979,323 to 1,980,537
_RS09415
ABID97_RS09420: ABID97_RS09420 - carbon monoxide dehydrogenase subunit G, at 1,980,571 to 1,981,209
_RS09420
ABID97_RS09425: ABID97_RS09425 - XdhC family protein, at 1,981,226 to 1,982,248
_RS09425
ABID97_RS09430: ABID97_RS09430 - monovalent cation/H(+) antiporter subunit G, at 1,982,271 to 1,982,630
_RS09430
ABID97_RS09435: ABID97_RS09435 - K+/H+ antiporter subunit F, at 1,982,627 to 1,982,905
_RS09435
ABID97_RS09440: ABID97_RS09440 - Na+/H+ antiporter subunit E, at 1,982,902 to 1,983,393
_RS09440
Position (kb) 1981
1982
1983 Strain fitness (log2 ratio) -1
0
1
2 at 1980.409 kb on + strand, within ABID97_RS09415 at 1980.409 kb on + strand, within ABID97_RS09415 at 1980.410 kb on - strand, within ABID97_RS09415 at 1980.700 kb on + strand, within ABID97_RS09420 at 1980.700 kb on + strand, within ABID97_RS09420 at 1980.790 kb on + strand, within ABID97_RS09420 at 1980.790 kb on + strand, within ABID97_RS09420 at 1980.943 kb on + strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1981.770 kb on - strand, within ABID97_RS09425 at 1981.997 kb on + strand, within ABID97_RS09425 at 1982.111 kb on + strand, within ABID97_RS09425 at 1982.112 kb on - strand, within ABID97_RS09425 at 1982.112 kb on - strand, within ABID97_RS09425 at 1982.434 kb on + strand, within ABID97_RS09430 at 1982.574 kb on + strand, within ABID97_RS09430 at 1982.734 kb on - strand, within ABID97_RS09435 at 1982.775 kb on + strand, within ABID97_RS09435 at 1982.775 kb on + strand, within ABID97_RS09435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 1,980,409 + ABID97_RS09415 0.89 -0.3 1,980,409 + ABID97_RS09415 0.89 -0.6 1,980,410 - ABID97_RS09415 0.89 -0.1 1,980,700 + ABID97_RS09420 0.20 +0.1 1,980,700 + ABID97_RS09420 0.20 +2.3 1,980,790 + ABID97_RS09420 0.34 -0.1 1,980,790 + ABID97_RS09420 0.34 -0.0 1,980,943 + ABID97_RS09420 0.58 +0.3 1,980,944 - ABID97_RS09420 0.58 +0.3 1,980,944 - ABID97_RS09420 0.58 +0.0 1,980,944 - ABID97_RS09420 0.58 +0.0 1,980,944 - ABID97_RS09420 0.58 -0.1 1,981,770 - ABID97_RS09425 0.53 -0.1 1,981,997 + ABID97_RS09425 0.75 +0.8 1,982,111 + ABID97_RS09425 0.87 +0.2 1,982,112 - ABID97_RS09425 0.87 +0.4 1,982,112 - ABID97_RS09425 0.87 +0.6 1,982,434 + ABID97_RS09430 0.45 +0.5 1,982,574 + ABID97_RS09430 0.84 +1.2 1,982,734 - ABID97_RS09435 0.38 -0.1 1,982,775 + ABID97_RS09435 0.53 +0.0 1,982,775 + ABID97_RS09435 0.53 -0.5
Or see this region's nucleotide sequence