Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06055 and ABID97_RS06060 are separated by 75 nucleotides ABID97_RS06060 and ABID97_RS06065 are separated by 21 nucleotides ABID97_RS06065 and ABID97_RS06070 are separated by 51 nucleotides ABID97_RS06070 and ABID97_RS06075 are separated by 12 nucleotides
ABID97_RS06055: ABID97_RS06055 - protease HtpX, at 1,280,824 to 1,281,699
_RS06055
ABID97_RS06060: ABID97_RS06060 - hypothetical protein, at 1,281,775 to 1,282,200
_RS06060
ABID97_RS06065: ABID97_RS06065 - ProQ/FINO family protein, at 1,282,222 to 1,283,028
_RS06065
ABID97_RS06070: ABID97_RS06070 - flavin reductase family protein, at 1,283,080 to 1,283,703
_RS06070
ABID97_RS06075: ABID97_RS06075 - NAD(P)/FAD-dependent oxidoreductase, at 1,283,716 to 1,285,356
_RS06075
Position (kb) 1282
1283
1284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1281.353 kb on - strand, within ABID97_RS06055 at 1281.415 kb on + strand, within ABID97_RS06055 at 1281.415 kb on + strand, within ABID97_RS06055 at 1281.416 kb on - strand, within ABID97_RS06055 at 1281.416 kb on - strand, within ABID97_RS06055 at 1281.416 kb on - strand, within ABID97_RS06055 at 1281.416 kb on - strand, within ABID97_RS06055 at 1281.935 kb on + strand, within ABID97_RS06060 at 1281.935 kb on + strand, within ABID97_RS06060 at 1282.206 kb on - strand at 1282.301 kb on + strand at 1282.301 kb on + strand at 1282.301 kb on + strand at 1282.301 kb on + strand at 1282.302 kb on - strand at 1282.455 kb on - strand, within ABID97_RS06065 at 1282.455 kb on - strand, within ABID97_RS06065 at 1283.180 kb on + strand, within ABID97_RS06070 at 1283.180 kb on + strand, within ABID97_RS06070 at 1283.180 kb on + strand, within ABID97_RS06070 at 1283.180 kb on + strand, within ABID97_RS06070 at 1283.180 kb on + strand, within ABID97_RS06070 at 1283.181 kb on - strand, within ABID97_RS06070 at 1283.181 kb on - strand, within ABID97_RS06070 at 1283.537 kb on + strand, within ABID97_RS06070 at 1283.538 kb on - strand, within ABID97_RS06070 at 1283.561 kb on + strand, within ABID97_RS06070 at 1283.562 kb on - strand, within ABID97_RS06070 at 1283.678 kb on + strand at 1283.679 kb on - strand at 1283.679 kb on - strand at 1283.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 1,281,353 - ABID97_RS06055 0.60 +0.0 1,281,415 + ABID97_RS06055 0.67 -0.2 1,281,415 + ABID97_RS06055 0.67 -0.1 1,281,416 - ABID97_RS06055 0.68 +0.4 1,281,416 - ABID97_RS06055 0.68 -0.2 1,281,416 - ABID97_RS06055 0.68 +0.1 1,281,416 - ABID97_RS06055 0.68 +2.5 1,281,935 + ABID97_RS06060 0.38 -0.7 1,281,935 + ABID97_RS06060 0.38 -0.1 1,282,206 - -1.6 1,282,301 + -0.1 1,282,301 + +0.2 1,282,301 + -0.0 1,282,301 + +0.3 1,282,302 - -0.3 1,282,455 - ABID97_RS06065 0.29 -0.7 1,282,455 - ABID97_RS06065 0.29 -1.3 1,283,180 + ABID97_RS06070 0.16 +0.0 1,283,180 + ABID97_RS06070 0.16 -1.1 1,283,180 + ABID97_RS06070 0.16 -0.4 1,283,180 + ABID97_RS06070 0.16 -0.2 1,283,180 + ABID97_RS06070 0.16 -0.1 1,283,181 - ABID97_RS06070 0.16 -1.2 1,283,181 - ABID97_RS06070 0.16 +0.7 1,283,537 + ABID97_RS06070 0.73 +0.2 1,283,538 - ABID97_RS06070 0.73 -0.6 1,283,561 + ABID97_RS06070 0.77 -0.3 1,283,562 - ABID97_RS06070 0.77 +0.3 1,283,678 + +0.9 1,283,679 - +1.9 1,283,679 - +0.2 1,283,796 - -1.8
Or see this region's nucleotide sequence