Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03840 and ABID97_RS03845 are separated by 17 nucleotides ABID97_RS03845 and ABID97_RS03850 are separated by 2 nucleotides ABID97_RS03850 and ABID97_RS03855 overlap by 4 nucleotides
ABID97_RS03840: ABID97_RS03840 - allophanate hydrolase, at 787,777 to 789,499
_RS03840
ABID97_RS03845: ABID97_RS03845 - ABC transporter substrate-binding protein, at 789,517 to 790,521
_RS03845
ABID97_RS03850: ABID97_RS03850 - ABC transporter permease, at 790,524 to 791,354
_RS03850
ABID97_RS03855: ABID97_RS03855 - ABC transporter ATP-binding protein, at 791,351 to 792,184
_RS03855
Position (kb) 789
790
791 Strain fitness (log2 ratio) -1
0
1
2 at 788.531 kb on - strand, within ABID97_RS03840 at 788.590 kb on + strand, within ABID97_RS03840 at 788.591 kb on - strand, within ABID97_RS03840 at 788.788 kb on + strand, within ABID97_RS03840 at 788.789 kb on - strand, within ABID97_RS03840 at 788.789 kb on - strand, within ABID97_RS03840 at 788.845 kb on + strand, within ABID97_RS03840 at 789.443 kb on + strand at 789.444 kb on - strand at 789.444 kb on - strand at 789.700 kb on + strand, within ABID97_RS03845 at 789.889 kb on + strand, within ABID97_RS03845 at 789.889 kb on + strand, within ABID97_RS03845 at 789.890 kb on - strand, within ABID97_RS03845 at 789.890 kb on - strand, within ABID97_RS03845 at 790.102 kb on + strand, within ABID97_RS03845 at 790.180 kb on + strand, within ABID97_RS03845 at 790.180 kb on + strand, within ABID97_RS03845 at 790.180 kb on + strand, within ABID97_RS03845 at 790.180 kb on + strand, within ABID97_RS03845 at 790.181 kb on - strand, within ABID97_RS03845 at 790.181 kb on - strand, within ABID97_RS03845 at 790.273 kb on + strand, within ABID97_RS03845 at 790.273 kb on + strand, within ABID97_RS03845 at 790.396 kb on + strand, within ABID97_RS03845 at 790.397 kb on - strand, within ABID97_RS03845 at 790.405 kb on + strand, within ABID97_RS03845 at 790.405 kb on + strand, within ABID97_RS03845 at 791.260 kb on - strand, within ABID97_RS03850
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 788,531 - ABID97_RS03840 0.44 +0.8 788,590 + ABID97_RS03840 0.47 +0.4 788,591 - ABID97_RS03840 0.47 -0.4 788,788 + ABID97_RS03840 0.59 +0.4 788,789 - ABID97_RS03840 0.59 +0.1 788,789 - ABID97_RS03840 0.59 +0.9 788,845 + ABID97_RS03840 0.62 +1.0 789,443 + +0.4 789,444 - -0.0 789,444 - -1.3 789,700 + ABID97_RS03845 0.18 +1.0 789,889 + ABID97_RS03845 0.37 -0.3 789,889 + ABID97_RS03845 0.37 -0.4 789,890 - ABID97_RS03845 0.37 +0.1 789,890 - ABID97_RS03845 0.37 -1.0 790,102 + ABID97_RS03845 0.58 +0.5 790,180 + ABID97_RS03845 0.66 +0.4 790,180 + ABID97_RS03845 0.66 +0.1 790,180 + ABID97_RS03845 0.66 +0.7 790,180 + ABID97_RS03845 0.66 +2.2 790,181 - ABID97_RS03845 0.66 +0.3 790,181 - ABID97_RS03845 0.66 -0.1 790,273 + ABID97_RS03845 0.75 -0.3 790,273 + ABID97_RS03845 0.75 +0.1 790,396 + ABID97_RS03845 0.87 -0.1 790,397 - ABID97_RS03845 0.88 +0.6 790,405 + ABID97_RS03845 0.88 -0.6 790,405 + ABID97_RS03845 0.88 -0.6 791,260 - ABID97_RS03850 0.89 +2.0
Or see this region's nucleotide sequence