Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02685

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02680 and ABID97_RS02685 are separated by 88 nucleotidesABID97_RS02685 and ABID97_RS02690 are separated by 134 nucleotides ABID97_RS02680: ABID97_RS02680 - chromosomal replication initiator protein DnaA, at 545,439 to 546,818 _RS02680 ABID97_RS02685: ABID97_RS02685 - DNA polymerase III subunit beta, at 546,907 to 548,013 _RS02685 ABID97_RS02690: ABID97_RS02690 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 548,148 to 550,772 _RS02690 Position (kb) 546 547 548 549Strain fitness (log2 ratio) -1 0 1at 546.867 kb on + strandat 546.867 kb on + strandat 546.867 kb on + strandat 546.867 kb on + strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.888 kb on - strandat 546.888 kb on - strandat 548.011 kb on + strandat 548.011 kb on + strandat 548.011 kb on + strandat 548.012 kb on - strandat 548.012 kb on - strandat 548.012 kb on - strandat 548.012 kb on - strandat 548.133 kb on + strandat 548.133 kb on + strandat 548.134 kb on - strandat 548.141 kb on + strandat 548.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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546,867 + -0.5
546,867 + +0.8
546,867 + +0.8
546,867 + +0.9
546,868 - -0.1
546,868 - +0.2
546,868 - +0.5
546,868 - -0.8
546,887 + -0.3
546,887 + +1.0
546,887 + +0.5
546,887 + +0.8
546,887 + +1.0
546,888 - +1.6
546,888 - +1.1
548,011 + -0.2
548,011 + +0.3
548,011 + +0.2
548,012 - +0.6
548,012 - +0.7
548,012 - +0.1
548,012 - +1.0
548,133 + -0.0
548,133 + +0.1
548,134 - +1.3
548,141 + +0.5
548,142 - -0.2

Or see this region's nucleotide sequence