Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01815 and ABID97_RS01820 overlap by 4 nucleotides ABID97_RS01820 and ABID97_RS01825 are separated by 160 nucleotides ABID97_RS01825 and ABID97_RS01830 are separated by 18 nucleotides
ABID97_RS01815: ABID97_RS01815 - hypothetical protein, at 355,188 to 355,694
_RS01815
ABID97_RS01820: ABID97_RS01820 - peptide deformylase, at 355,691 to 356,212
_RS01820
ABID97_RS01825: ABID97_RS01825 - LysM peptidoglycan-binding domain-containing protein, at 356,373 to 357,587
_RS01825
ABID97_RS01830: ABID97_RS01830 - DNA-processing protein DprA, at 357,606 to 358,766
_RS01830
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.511 kb on - strand, within ABID97_RS01815 at 355.774 kb on - strand, within ABID97_RS01820 at 355.774 kb on - strand, within ABID97_RS01820 at 356.235 kb on + strand at 356.236 kb on - strand at 356.335 kb on + strand at 356.335 kb on + strand at 356.336 kb on - strand at 356.336 kb on - strand at 356.414 kb on - strand at 356.476 kb on - strand at 356.568 kb on + strand, within ABID97_RS01825 at 356.568 kb on + strand, within ABID97_RS01825 at 356.568 kb on + strand, within ABID97_RS01825 at 356.568 kb on + strand, within ABID97_RS01825 at 356.569 kb on - strand, within ABID97_RS01825 at 356.688 kb on + strand, within ABID97_RS01825 at 356.689 kb on - strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.707 kb on - strand, within ABID97_RS01825 at 356.967 kb on + strand, within ABID97_RS01825 at 356.968 kb on - strand, within ABID97_RS01825 at 356.968 kb on - strand, within ABID97_RS01825 at 356.988 kb on - strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.315 kb on + strand, within ABID97_RS01825 at 357.545 kb on + strand at 357.546 kb on - strand at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.934 kb on - strand, within ABID97_RS01830 at 357.934 kb on - strand, within ABID97_RS01830 at 357.982 kb on + strand, within ABID97_RS01830 at 358.191 kb on + strand, within ABID97_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 355,511 - ABID97_RS01815 0.64 +0.7 355,774 - ABID97_RS01820 0.16 +0.4 355,774 - ABID97_RS01820 0.16 +2.2 356,235 + -1.5 356,236 - -0.3 356,335 + +0.6 356,335 + -0.4 356,336 - +1.1 356,336 - +0.1 356,414 - -1.3 356,476 - +0.4 356,568 + ABID97_RS01825 0.16 -0.7 356,568 + ABID97_RS01825 0.16 -0.8 356,568 + ABID97_RS01825 0.16 -0.1 356,568 + ABID97_RS01825 0.16 -1.2 356,569 - ABID97_RS01825 0.16 -0.3 356,688 + ABID97_RS01825 0.26 -0.1 356,689 - ABID97_RS01825 0.26 -0.2 356,706 + ABID97_RS01825 0.27 -0.0 356,706 + ABID97_RS01825 0.27 -0.4 356,706 + ABID97_RS01825 0.27 -0.7 356,707 - ABID97_RS01825 0.27 -0.6 356,967 + ABID97_RS01825 0.49 -2.0 356,968 - ABID97_RS01825 0.49 -0.6 356,968 - ABID97_RS01825 0.49 -1.0 356,988 - ABID97_RS01825 0.51 +0.0 357,096 + ABID97_RS01825 0.60 -1.5 357,096 + ABID97_RS01825 0.60 +0.1 357,096 + ABID97_RS01825 0.60 -0.1 357,096 + ABID97_RS01825 0.60 -0.6 357,096 + ABID97_RS01825 0.60 -0.7 357,264 + ABID97_RS01825 0.73 -0.4 357,264 + ABID97_RS01825 0.73 -0.8 357,264 + ABID97_RS01825 0.73 -0.7 357,264 + ABID97_RS01825 0.73 -1.9 357,264 + ABID97_RS01825 0.73 -0.0 357,264 + ABID97_RS01825 0.73 +0.2 357,265 - ABID97_RS01825 0.73 -0.9 357,265 - ABID97_RS01825 0.73 -1.4 357,265 - ABID97_RS01825 0.73 -0.9 357,265 - ABID97_RS01825 0.73 -0.5 357,265 - ABID97_RS01825 0.73 -1.0 357,315 + ABID97_RS01825 0.78 -0.5 357,545 + -0.6 357,546 - -0.9 357,933 + ABID97_RS01830 0.28 -0.5 357,933 + ABID97_RS01830 0.28 -0.3 357,933 + ABID97_RS01830 0.28 +0.0 357,933 + ABID97_RS01830 0.28 +0.4 357,933 + ABID97_RS01830 0.28 +0.4 357,933 + ABID97_RS01830 0.28 -0.9 357,934 - ABID97_RS01830 0.28 +0.1 357,934 - ABID97_RS01830 0.28 -0.6 357,982 + ABID97_RS01830 0.32 +0.2 358,191 + ABID97_RS01830 0.50 +0.0
Or see this region's nucleotide sequence