Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01265

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01255 and ABID97_RS01260 overlap by 4 nucleotidesABID97_RS01260 and ABID97_RS01265 are separated by 146 nucleotidesABID97_RS01265 and ABID97_RS01270 are separated by 182 nucleotides ABID97_RS01255: ABID97_RS01255 - 5-oxoprolinase subunit PxpA, at 257,289 to 258,101 _RS01255 ABID97_RS01260: ABID97_RS01260 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 258,098 to 258,325 _RS01260 ABID97_RS01265: ABID97_RS01265 - MFS transporter, at 258,472 to 259,824 _RS01265 ABID97_RS01270: ABID97_RS01270 - ABC transporter substrate-binding protein, at 260,007 to 261,137 _RS01270 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1at 257.634 kb on + strand, within ABID97_RS01255at 257.715 kb on + strand, within ABID97_RS01255at 257.716 kb on - strand, within ABID97_RS01255at 257.799 kb on + strand, within ABID97_RS01255at 257.799 kb on + strand, within ABID97_RS01255at 257.800 kb on - strand, within ABID97_RS01255at 258.619 kb on + strand, within ABID97_RS01265at 258.619 kb on + strand, within ABID97_RS01265at 258.619 kb on + strand, within ABID97_RS01265at 258.640 kb on + strand, within ABID97_RS01265at 258.994 kb on + strand, within ABID97_RS01265at 258.994 kb on + strand, within ABID97_RS01265at 259.330 kb on + strand, within ABID97_RS01265at 259.330 kb on + strand, within ABID97_RS01265at 259.330 kb on + strand, within ABID97_RS01265at 259.330 kb on + strand, within ABID97_RS01265at 259.331 kb on - strand, within ABID97_RS01265at 259.331 kb on - strand, within ABID97_RS01265at 259.331 kb on - strand, within ABID97_RS01265at 259.343 kb on - strand, within ABID97_RS01265at 259.343 kb on - strand, within ABID97_RS01265at 259.343 kb on - strand, within ABID97_RS01265at 259.352 kb on - strand, within ABID97_RS01265at 259.369 kb on + strand, within ABID97_RS01265at 259.369 kb on + strand, within ABID97_RS01265at 259.480 kb on + strand, within ABID97_RS01265at 259.481 kb on - strand, within ABID97_RS01265at 259.481 kb on - strand, within ABID97_RS01265at 259.693 kb on + strandat 259.693 kb on + strandat 259.694 kb on - strandat 259.694 kb on - strandat 259.694 kb on - strandat 259.694 kb on - strandat 259.694 kb on - strandat 259.694 kb on - strandat 260.215 kb on + strand, within ABID97_RS01270at 260.216 kb on - strand, within ABID97_RS01270at 260.299 kb on + strand, within ABID97_RS01270at 260.310 kb on + strand, within ABID97_RS01270at 260.412 kb on - strand, within ABID97_RS01270at 260.418 kb on + strand, within ABID97_RS01270at 260.424 kb on + strand, within ABID97_RS01270

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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257,634 + ABID97_RS01255 0.42 +0.3
257,715 + ABID97_RS01255 0.52 -0.2
257,716 - ABID97_RS01255 0.53 -0.3
257,799 + ABID97_RS01255 0.63 -0.4
257,799 + ABID97_RS01255 0.63 +0.6
257,800 - ABID97_RS01255 0.63 +0.2
258,619 + ABID97_RS01265 0.11 -0.3
258,619 + ABID97_RS01265 0.11 -0.0
258,619 + ABID97_RS01265 0.11 +0.8
258,640 + ABID97_RS01265 0.12 +0.7
258,994 + ABID97_RS01265 0.39 +0.2
258,994 + ABID97_RS01265 0.39 -0.1
259,330 + ABID97_RS01265 0.63 +0.4
259,330 + ABID97_RS01265 0.63 -0.4
259,330 + ABID97_RS01265 0.63 -1.0
259,330 + ABID97_RS01265 0.63 +0.1
259,331 - ABID97_RS01265 0.63 +0.4
259,331 - ABID97_RS01265 0.63 +1.0
259,331 - ABID97_RS01265 0.63 -0.6
259,343 - ABID97_RS01265 0.64 +0.3
259,343 - ABID97_RS01265 0.64 -0.5
259,343 - ABID97_RS01265 0.64 -0.4
259,352 - ABID97_RS01265 0.65 -0.1
259,369 + ABID97_RS01265 0.66 +0.0
259,369 + ABID97_RS01265 0.66 +0.4
259,480 + ABID97_RS01265 0.75 +0.7
259,481 - ABID97_RS01265 0.75 -0.4
259,481 - ABID97_RS01265 0.75 -0.1
259,693 + +0.5
259,693 + -0.4
259,694 - -0.3
259,694 - +0.3
259,694 - +0.0
259,694 - +0.6
259,694 - -0.3
259,694 - -0.3
260,215 + ABID97_RS01270 0.18 -0.4
260,216 - ABID97_RS01270 0.18 -1.1
260,299 + ABID97_RS01270 0.26 -0.3
260,310 + ABID97_RS01270 0.27 -0.3
260,412 - ABID97_RS01270 0.36 -0.1
260,418 + ABID97_RS01270 0.36 -0.4
260,424 + ABID97_RS01270 0.37 +0.2

Or see this region's nucleotide sequence