Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00095 and ABID97_RS00100 are separated by 68 nucleotides ABID97_RS00100 and ABID97_RS00105 are separated by 18 nucleotides ABID97_RS00105 and ABID97_RS00110 are separated by 119 nucleotides
ABID97_RS00095: ABID97_RS00095 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,265 to 21,599
_RS00095
ABID97_RS00100: ABID97_RS00100 - formyltetrahydrofolate deformylase, at 21,668 to 22,525
_RS00100
ABID97_RS00105: ABID97_RS00105 - YXWGXW repeat-containing protein, at 22,544 to 22,921
_RS00105
ABID97_RS00110: ABID97_RS00110 - SGNH/GDSL hydrolase family protein, at 23,041 to 24,363
_RS00110
Position (kb) 21
22
23 Strain fitness (log2 ratio) -1
0
1
2 at 20.894 kb on - strand, within ABID97_RS00095 at 21.043 kb on + strand, within ABID97_RS00095 at 21.043 kb on + strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.044 kb on - strand, within ABID97_RS00095 at 21.169 kb on + strand, within ABID97_RS00095 at 21.169 kb on + strand, within ABID97_RS00095 at 21.227 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.374 kb on - strand, within ABID97_RS00095 at 21.592 kb on + strand at 21.592 kb on + strand at 21.592 kb on + strand at 21.593 kb on - strand at 21.593 kb on - strand at 21.593 kb on - strand at 21.689 kb on + strand at 21.789 kb on - strand, within ABID97_RS00100 at 22.053 kb on - strand, within ABID97_RS00100 at 22.070 kb on + strand, within ABID97_RS00100 at 22.070 kb on + strand, within ABID97_RS00100 at 22.287 kb on - strand, within ABID97_RS00100 at 22.669 kb on - strand, within ABID97_RS00105 at 22.669 kb on - strand, within ABID97_RS00105 at 22.669 kb on - strand, within ABID97_RS00105 at 22.674 kb on + strand, within ABID97_RS00105 at 22.675 kb on - strand, within ABID97_RS00105 at 22.675 kb on - strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.695 kb on + strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.696 kb on - strand, within ABID97_RS00105 at 22.737 kb on + strand, within ABID97_RS00105 at 22.738 kb on - strand, within ABID97_RS00105 at 22.738 kb on - strand, within ABID97_RS00105 at 22.759 kb on - strand, within ABID97_RS00105 at 22.981 kb on + strand at 22.990 kb on - strand at 22.990 kb on - strand at 23.004 kb on + strand at 23.004 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 20,894 - ABID97_RS00095 0.47 +0.4 21,043 + ABID97_RS00095 0.58 +0.4 21,043 + ABID97_RS00095 0.58 +0.6 21,044 - ABID97_RS00095 0.58 +0.6 21,044 - ABID97_RS00095 0.58 +0.8 21,044 - ABID97_RS00095 0.58 +0.1 21,044 - ABID97_RS00095 0.58 +0.0 21,169 + ABID97_RS00095 0.68 +1.1 21,169 + ABID97_RS00095 0.68 +0.6 21,227 - ABID97_RS00095 0.72 +0.9 21,374 - ABID97_RS00095 0.83 +0.5 21,374 - ABID97_RS00095 0.83 +0.6 21,374 - ABID97_RS00095 0.83 +0.3 21,592 + +1.6 21,592 + +1.0 21,592 + +0.6 21,593 - +1.3 21,593 - +0.2 21,593 - +0.8 21,689 + +0.9 21,789 - ABID97_RS00100 0.14 +0.9 22,053 - ABID97_RS00100 0.45 +1.5 22,070 + ABID97_RS00100 0.47 -0.1 22,070 + ABID97_RS00100 0.47 +1.3 22,287 - ABID97_RS00100 0.72 +1.9 22,669 - ABID97_RS00105 0.33 +0.4 22,669 - ABID97_RS00105 0.33 +0.7 22,669 - ABID97_RS00105 0.33 +0.3 22,674 + ABID97_RS00105 0.34 +0.2 22,675 - ABID97_RS00105 0.35 -0.1 22,675 - ABID97_RS00105 0.35 +0.6 22,695 + ABID97_RS00105 0.40 +0.0 22,695 + ABID97_RS00105 0.40 +0.8 22,695 + ABID97_RS00105 0.40 -0.2 22,695 + ABID97_RS00105 0.40 +0.0 22,695 + ABID97_RS00105 0.40 +0.2 22,695 + ABID97_RS00105 0.40 +0.5 22,695 + ABID97_RS00105 0.40 +0.1 22,695 + ABID97_RS00105 0.40 -0.0 22,695 + ABID97_RS00105 0.40 +0.1 22,695 + ABID97_RS00105 0.40 -0.4 22,695 + ABID97_RS00105 0.40 +1.0 22,695 + ABID97_RS00105 0.40 +0.7 22,696 - ABID97_RS00105 0.40 +0.4 22,696 - ABID97_RS00105 0.40 +0.3 22,696 - ABID97_RS00105 0.40 +0.1 22,696 - ABID97_RS00105 0.40 +0.1 22,696 - ABID97_RS00105 0.40 +0.4 22,696 - ABID97_RS00105 0.40 +0.5 22,696 - ABID97_RS00105 0.40 -0.4 22,696 - ABID97_RS00105 0.40 +0.4 22,696 - ABID97_RS00105 0.40 +0.2 22,696 - ABID97_RS00105 0.40 +0.5 22,696 - ABID97_RS00105 0.40 +0.3 22,696 - ABID97_RS00105 0.40 +0.3 22,696 - ABID97_RS00105 0.40 -0.3 22,696 - ABID97_RS00105 0.40 +0.4 22,696 - ABID97_RS00105 0.40 +0.8 22,696 - ABID97_RS00105 0.40 +0.5 22,737 + ABID97_RS00105 0.51 +0.3 22,738 - ABID97_RS00105 0.51 +1.0 22,738 - ABID97_RS00105 0.51 -0.5 22,759 - ABID97_RS00105 0.57 -0.2 22,981 + +0.0 22,990 - -0.1 22,990 - +0.7 23,004 + -0.0 23,004 + +0.2 23,126 + -0.5 23,126 + +0.5 23,127 - +0.7
Or see this region's nucleotide sequence