Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS23755 and RPSI07_RS23760 are separated by 141 nucleotides RPSI07_RS23760 and RPSI07_RS23765 are separated by 67 nucleotides RPSI07_RS23765 and RPSI07_RS23770 are separated by 33 nucleotides RPSI07_RS23770 and RPSI07_RS23775 overlap by 1 nucleotides RPSI07_RS23775 and RPSI07_RS23780 are separated by 15 nucleotides
RPSI07_RS23755: RPSI07_RS23755 - sensor histidine kinase, at 3,474,491 to 3,475,837
_RS23755
RPSI07_RS23760: RPSI07_RS23760 - copper chaperone PCu(A)C, at 3,475,979 to 3,476,482
_RS23760
RPSI07_RS23765: RPSI07_RS23765 - hypothetical protein, at 3,476,550 to 3,476,765
_RS23765
RPSI07_RS23770: RPSI07_RS23770 - hypothetical protein, at 3,476,799 to 3,477,041
_RS23770
RPSI07_RS23775: RPSI07_RS23775 - transmembrane anti-sigma factor, at 3,477,041 to 3,477,256
_RS23775
RPSI07_RS23780: RPSI07_RS23780 - RNA polymerase sigma factor, at 3,477,272 to 3,477,865
_RS23780
Position (kb) 3475
3476
3477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3475.368 kb on + strand, within RPSI07_RS23755 at 3475.369 kb on - strand, within RPSI07_RS23755 at 3475.369 kb on - strand, within RPSI07_RS23755 at 3475.370 kb on - strand, within RPSI07_RS23755 at 3475.410 kb on + strand, within RPSI07_RS23755 at 3475.410 kb on + strand, within RPSI07_RS23755 at 3475.410 kb on + strand, within RPSI07_RS23755 at 3475.410 kb on + strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.411 kb on - strand, within RPSI07_RS23755 at 3475.431 kb on + strand, within RPSI07_RS23755 at 3475.446 kb on + strand, within RPSI07_RS23755 at 3475.446 kb on + strand, within RPSI07_RS23755 at 3475.446 kb on + strand, within RPSI07_RS23755 at 3475.447 kb on - strand, within RPSI07_RS23755 at 3475.447 kb on - strand, within RPSI07_RS23755 at 3475.447 kb on - strand, within RPSI07_RS23755 at 3475.512 kb on + strand, within RPSI07_RS23755 at 3475.512 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.551 kb on + strand, within RPSI07_RS23755 at 3475.606 kb on + strand, within RPSI07_RS23755 at 3475.606 kb on + strand, within RPSI07_RS23755 at 3475.787 kb on + strand at 3475.788 kb on - strand at 3475.851 kb on - strand at 3475.851 kb on - strand at 3475.942 kb on + strand at 3475.943 kb on - strand at 3475.943 kb on - strand at 3475.943 kb on - strand at 3476.297 kb on + strand, within RPSI07_RS23760 at 3476.298 kb on - strand, within RPSI07_RS23760 at 3476.763 kb on + strand at 3476.764 kb on - strand at 3476.933 kb on + strand, within RPSI07_RS23770 at 3476.934 kb on - strand, within RPSI07_RS23770 at 3476.934 kb on - strand, within RPSI07_RS23770 at 3476.934 kb on - strand, within RPSI07_RS23770 at 3476.934 kb on - strand, within RPSI07_RS23770 at 3477.128 kb on - strand, within RPSI07_RS23775 at 3477.343 kb on - strand, within RPSI07_RS23780 at 3477.343 kb on - strand, within RPSI07_RS23780 at 3477.343 kb on - strand, within RPSI07_RS23780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 3,475,368 + RPSI07_RS23755 0.65 +0.1 3,475,369 - RPSI07_RS23755 0.65 -0.1 3,475,369 - RPSI07_RS23755 0.65 -0.3 3,475,370 - RPSI07_RS23755 0.65 -2.5 3,475,410 + RPSI07_RS23755 0.68 -0.9 3,475,410 + RPSI07_RS23755 0.68 -0.5 3,475,410 + RPSI07_RS23755 0.68 -0.3 3,475,410 + RPSI07_RS23755 0.68 -1.6 3,475,411 - RPSI07_RS23755 0.68 -3.5 3,475,411 - RPSI07_RS23755 0.68 -0.7 3,475,411 - RPSI07_RS23755 0.68 -2.7 3,475,411 - RPSI07_RS23755 0.68 -3.5 3,475,411 - RPSI07_RS23755 0.68 -3.1 3,475,411 - RPSI07_RS23755 0.68 -0.9 3,475,411 - RPSI07_RS23755 0.68 -2.2 3,475,431 + RPSI07_RS23755 0.70 -1.0 3,475,446 + RPSI07_RS23755 0.71 -2.6 3,475,446 + RPSI07_RS23755 0.71 -3.2 3,475,446 + RPSI07_RS23755 0.71 -0.2 3,475,447 - RPSI07_RS23755 0.71 -2.6 3,475,447 - RPSI07_RS23755 0.71 -2.6 3,475,447 - RPSI07_RS23755 0.71 -1.4 3,475,512 + RPSI07_RS23755 0.76 -1.8 3,475,512 + RPSI07_RS23755 0.76 -2.0 3,475,551 + RPSI07_RS23755 0.79 -2.5 3,475,551 + RPSI07_RS23755 0.79 -1.1 3,475,551 + RPSI07_RS23755 0.79 +0.7 3,475,551 + RPSI07_RS23755 0.79 -1.2 3,475,551 + RPSI07_RS23755 0.79 -2.2 3,475,551 + RPSI07_RS23755 0.79 -2.2 3,475,606 + RPSI07_RS23755 0.83 -0.0 3,475,606 + RPSI07_RS23755 0.83 -3.0 3,475,787 + -0.6 3,475,788 - -2.5 3,475,851 - -1.4 3,475,851 - +0.1 3,475,942 + -0.7 3,475,943 - +0.5 3,475,943 - -1.2 3,475,943 - -1.2 3,476,297 + RPSI07_RS23760 0.63 -0.6 3,476,298 - RPSI07_RS23760 0.63 +0.5 3,476,763 + +1.4 3,476,764 - +0.3 3,476,933 + RPSI07_RS23770 0.55 -2.5 3,476,934 - RPSI07_RS23770 0.56 -1.4 3,476,934 - RPSI07_RS23770 0.56 -0.0 3,476,934 - RPSI07_RS23770 0.56 -1.4 3,476,934 - RPSI07_RS23770 0.56 -0.6 3,477,128 - RPSI07_RS23775 0.40 -0.5 3,477,343 - RPSI07_RS23780 0.12 -0.6 3,477,343 - RPSI07_RS23780 0.12 -0.1 3,477,343 - RPSI07_RS23780 0.12 -0.8
Or see this region's nucleotide sequence