Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS08720 and RPSI07_RS08725 are separated by 202 nucleotides RPSI07_RS08725 and RPSI07_RS08730 overlap by 4 nucleotides RPSI07_RS08730 and RPSI07_RS08735 are separated by 35 nucleotides RPSI07_RS08735 and RPSI07_RS08740 are separated by 49 nucleotides
RPSI07_RS08720: RPSI07_RS08720 - MBL fold metallo-hydrolase, at 191,483 to 192,139
_RS08720
RPSI07_RS08725: RPSI07_RS08725 - septal ring lytic transglycosylase RlpA family protein, at 192,342 to 193,049
_RS08725
RPSI07_RS08730: RPSI07_RS08730 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 193,046 to 193,948
_RS08730
RPSI07_RS08735: RPSI07_RS08735 - YraN family protein, at 193,984 to 194,385
_RS08735
RPSI07_RS08740: RPSI07_RS08740 - BON domain-containing protein, at 194,435 to 195,250
_RS08740
Position (kb) 193
194 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 192.115 kb on + strand at 192.116 kb on - strand at 192.307 kb on + strand at 192.328 kb on + strand at 192.330 kb on - strand at 192.790 kb on - strand, within RPSI07_RS08725 at 192.841 kb on - strand, within RPSI07_RS08725 at 192.841 kb on - strand, within RPSI07_RS08725 at 192.841 kb on - strand, within RPSI07_RS08725 at 193.048 kb on - strand at 193.086 kb on + strand at 193.087 kb on - strand at 193.087 kb on - strand at 193.387 kb on + strand, within RPSI07_RS08730 at 193.387 kb on + strand, within RPSI07_RS08730 at 193.387 kb on + strand, within RPSI07_RS08730 at 193.388 kb on - strand, within RPSI07_RS08730 at 193.413 kb on + strand, within RPSI07_RS08730 at 193.413 kb on + strand, within RPSI07_RS08730 at 193.414 kb on - strand, within RPSI07_RS08730 at 193.414 kb on - strand, within RPSI07_RS08730 at 193.666 kb on - strand, within RPSI07_RS08730 at 193.666 kb on - strand, within RPSI07_RS08730 at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.888 kb on - strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.889 kb on + strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 193.890 kb on - strand at 194.063 kb on - strand, within RPSI07_RS08735 at 194.063 kb on - strand, within RPSI07_RS08735 at 194.102 kb on - strand, within RPSI07_RS08735 at 194.102 kb on - strand, within RPSI07_RS08735 at 194.102 kb on - strand, within RPSI07_RS08735 at 194.651 kb on + strand, within RPSI07_RS08740 at 194.652 kb on - strand, within RPSI07_RS08740 at 194.652 kb on - strand, within RPSI07_RS08740 at 194.684 kb on + strand, within RPSI07_RS08740 at 194.684 kb on + strand, within RPSI07_RS08740 at 194.685 kb on - strand, within RPSI07_RS08740 at 194.685 kb on - strand, within RPSI07_RS08740 at 194.685 kb on - strand, within RPSI07_RS08740 at 194.751 kb on - strand, within RPSI07_RS08740 at 194.751 kb on - strand, within RPSI07_RS08740 at 194.840 kb on + strand, within RPSI07_RS08740 at 194.840 kb on + strand, within RPSI07_RS08740 at 194.841 kb on - strand, within RPSI07_RS08740 at 194.841 kb on - strand, within RPSI07_RS08740 at 194.841 kb on - strand, within RPSI07_RS08740 at 194.841 kb on - strand, within RPSI07_RS08740 at 194.930 kb on + strand, within RPSI07_RS08740 at 194.930 kb on + strand, within RPSI07_RS08740 at 194.931 kb on - strand, within RPSI07_RS08740
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 192,115 + +2.6 192,116 - +0.1 192,307 + -1.2 192,328 + -0.2 192,330 - -0.6 192,790 - RPSI07_RS08725 0.63 -1.4 192,841 - RPSI07_RS08725 0.70 -0.6 192,841 - RPSI07_RS08725 0.70 -1.5 192,841 - RPSI07_RS08725 0.70 +1.1 193,048 - -0.5 193,086 + +0.6 193,087 - +0.6 193,087 - -0.4 193,387 + RPSI07_RS08730 0.38 +1.0 193,387 + RPSI07_RS08730 0.38 -1.9 193,387 + RPSI07_RS08730 0.38 -1.0 193,388 - RPSI07_RS08730 0.38 -0.4 193,413 + RPSI07_RS08730 0.41 +0.9 193,413 + RPSI07_RS08730 0.41 +0.5 193,414 - RPSI07_RS08730 0.41 -0.4 193,414 - RPSI07_RS08730 0.41 +0.9 193,666 - RPSI07_RS08730 0.69 +1.0 193,666 - RPSI07_RS08730 0.69 +0.4 193,887 + -0.2 193,887 + -0.3 193,887 + -0.1 193,887 + -0.2 193,887 + +1.8 193,887 + -0.2 193,887 + -0.4 193,887 + +1.0 193,887 + +1.6 193,887 + +5.4 193,887 + -1.7 193,887 + +0.6 193,887 + -0.7 193,888 - -0.5 193,888 - -0.2 193,888 - +0.0 193,888 - +0.9 193,888 - +0.2 193,888 - +0.4 193,888 - -0.5 193,888 - -1.3 193,888 - -1.5 193,889 + -0.4 193,889 + -1.4 193,889 + +0.1 193,889 + +1.4 193,889 + -0.7 193,889 + -0.7 193,889 + +1.2 193,889 + +0.2 193,890 - +0.4 193,890 - +1.8 193,890 - -0.1 193,890 - -1.1 193,890 - +0.9 193,890 - -0.5 193,890 - +1.3 193,890 - +0.6 194,063 - RPSI07_RS08735 0.20 +0.7 194,063 - RPSI07_RS08735 0.20 -0.2 194,102 - RPSI07_RS08735 0.29 +1.4 194,102 - RPSI07_RS08735 0.29 -0.3 194,102 - RPSI07_RS08735 0.29 -1.2 194,651 + RPSI07_RS08740 0.26 -1.5 194,652 - RPSI07_RS08740 0.27 +0.1 194,652 - RPSI07_RS08740 0.27 -0.2 194,684 + RPSI07_RS08740 0.31 +0.8 194,684 + RPSI07_RS08740 0.31 -0.8 194,685 - RPSI07_RS08740 0.31 +0.2 194,685 - RPSI07_RS08740 0.31 +1.3 194,685 - RPSI07_RS08740 0.31 +1.3 194,751 - RPSI07_RS08740 0.39 -1.3 194,751 - RPSI07_RS08740 0.39 +0.2 194,840 + RPSI07_RS08740 0.50 +0.0 194,840 + RPSI07_RS08740 0.50 +0.2 194,841 - RPSI07_RS08740 0.50 +0.4 194,841 - RPSI07_RS08740 0.50 -0.0 194,841 - RPSI07_RS08740 0.50 -0.5 194,841 - RPSI07_RS08740 0.50 -0.2 194,930 + RPSI07_RS08740 0.61 -0.5 194,930 + RPSI07_RS08740 0.61 -0.3 194,931 - RPSI07_RS08740 0.61 +0.2
Or see this region's nucleotide sequence