Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_468 and PfGW456L13_469 are separated by 290 nucleotides PfGW456L13_469 and PfGW456L13_470 are separated by 1 nucleotides PfGW456L13_470 and PfGW456L13_471 are separated by 44 nucleotides
PfGW456L13_468 - FIG00953394: hypothetical protein, at 537,002 to 537,583
_468
PfGW456L13_469 - Biopolymer transport protein ExbD/TolR, at 537,874 to 538,275
_469
PfGW456L13_470 - MotA/TolQ/ExbB proton channel family protein, at 538,277 to 539,002
_470
PfGW456L13_471 - Ferric siderophore transport system, periplasmic binding protein TonB, at 539,047 to 539,856
_471
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.623 kb on - strand at 537.624 kb on + strand at 537.624 kb on + strand at 537.624 kb on + strand at 537.624 kb on + strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.625 kb on - strand at 537.638 kb on - strand at 537.675 kb on + strand at 537.822 kb on - strand at 537.885 kb on + strand at 537.903 kb on + strand at 537.903 kb on + strand at 537.951 kb on - strand, within PfGW456L13_469 at 538.042 kb on + strand, within PfGW456L13_469 at 538.042 kb on + strand, within PfGW456L13_469 at 538.043 kb on - strand, within PfGW456L13_469 at 538.043 kb on - strand, within PfGW456L13_469 at 538.059 kb on + strand, within PfGW456L13_469 at 538.060 kb on - strand, within PfGW456L13_469 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.377 kb on + strand, within PfGW456L13_470 at 538.378 kb on - strand, within PfGW456L13_470 at 538.378 kb on - strand, within PfGW456L13_470 at 538.378 kb on - strand, within PfGW456L13_470 at 538.437 kb on + strand, within PfGW456L13_470 at 538.443 kb on + strand, within PfGW456L13_470 at 538.443 kb on + strand, within PfGW456L13_470 at 538.444 kb on - strand, within PfGW456L13_470 at 538.444 kb on - strand, within PfGW456L13_470 at 538.444 kb on - strand, within PfGW456L13_470 at 538.444 kb on - strand, within PfGW456L13_470 at 539.007 kb on + strand at 539.007 kb on + strand at 539.007 kb on + strand at 539.007 kb on + strand at 539.007 kb on + strand at 539.007 kb on + strand at 539.007 kb on + strand at 539.008 kb on - strand at 539.008 kb on - strand at 539.008 kb on - strand at 539.008 kb on - strand at 539.008 kb on - strand at 539.019 kb on - strand at 539.048 kb on + strand at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.224 kb on + strand, within PfGW456L13_471 at 539.225 kb on - strand, within PfGW456L13_471 at 539.225 kb on - strand, within PfGW456L13_471 at 539.225 kb on - strand, within PfGW456L13_471 at 539.301 kb on - strand, within PfGW456L13_471 at 539.654 kb on + strand, within PfGW456L13_471 at 539.654 kb on + strand, within PfGW456L13_471 at 539.655 kb on - strand, within PfGW456L13_471 at 539.655 kb on - strand, within PfGW456L13_471 at 539.861 kb on + strand at 539.861 kb on + strand at 539.862 kb on - strand at 539.862 kb on - strand at 539.862 kb on - strand at 539.929 kb on - strand at 539.929 kb on - strand at 539.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 537,623 - -1.4 537,624 + +0.4 537,624 + -0.5 537,624 + -0.3 537,624 + -0.5 537,625 - +0.1 537,625 - +0.3 537,625 - +0.3 537,625 - +1.0 537,625 - +0.7 537,625 - +0.1 537,625 - +1.1 537,625 - +0.5 537,638 - +0.0 537,675 + +0.5 537,822 - -0.0 537,885 + +0.5 537,903 + +0.4 537,903 + -0.1 537,951 - PfGW456L13_469 0.19 -0.6 538,042 + PfGW456L13_469 0.42 +0.9 538,042 + PfGW456L13_469 0.42 +0.5 538,043 - PfGW456L13_469 0.42 -1.0 538,043 - PfGW456L13_469 0.42 +1.2 538,059 + PfGW456L13_469 0.46 +0.1 538,060 - PfGW456L13_469 0.46 +1.5 538,377 + PfGW456L13_470 0.14 -1.2 538,377 + PfGW456L13_470 0.14 +0.8 538,377 + PfGW456L13_470 0.14 -2.8 538,377 + PfGW456L13_470 0.14 -0.7 538,377 + PfGW456L13_470 0.14 -0.9 538,377 + PfGW456L13_470 0.14 +0.5 538,377 + PfGW456L13_470 0.14 -0.8 538,378 - PfGW456L13_470 0.14 -2.6 538,378 - PfGW456L13_470 0.14 -1.7 538,378 - PfGW456L13_470 0.14 -1.9 538,437 + PfGW456L13_470 0.22 +1.0 538,443 + PfGW456L13_470 0.23 +1.1 538,443 + PfGW456L13_470 0.23 -1.4 538,444 - PfGW456L13_470 0.23 +0.6 538,444 - PfGW456L13_470 0.23 +0.4 538,444 - PfGW456L13_470 0.23 -0.8 538,444 - PfGW456L13_470 0.23 +0.2 539,007 + -0.9 539,007 + -1.1 539,007 + +0.9 539,007 + -1.2 539,007 + +0.0 539,007 + -0.2 539,007 + +1.0 539,008 - -0.5 539,008 - +1.3 539,008 - -1.3 539,008 - -0.7 539,008 - -0.9 539,019 - -0.2 539,048 + +0.4 539,224 + PfGW456L13_471 0.22 +0.4 539,224 + PfGW456L13_471 0.22 +0.2 539,224 + PfGW456L13_471 0.22 +1.4 539,224 + PfGW456L13_471 0.22 +0.0 539,224 + PfGW456L13_471 0.22 -0.0 539,224 + PfGW456L13_471 0.22 -2.7 539,224 + PfGW456L13_471 0.22 -0.2 539,224 + PfGW456L13_471 0.22 -0.6 539,224 + PfGW456L13_471 0.22 +0.6 539,224 + PfGW456L13_471 0.22 -1.0 539,225 - PfGW456L13_471 0.22 -0.3 539,225 - PfGW456L13_471 0.22 -0.4 539,225 - PfGW456L13_471 0.22 +0.0 539,301 - PfGW456L13_471 0.31 -2.7 539,654 + PfGW456L13_471 0.75 +1.1 539,654 + PfGW456L13_471 0.75 +0.9 539,655 - PfGW456L13_471 0.75 +0.4 539,655 - PfGW456L13_471 0.75 -0.8 539,861 + +1.9 539,861 + +0.7 539,862 - +0.5 539,862 - +0.1 539,862 - +0.5 539,929 - -0.4 539,929 - -0.5 539,929 - -1.8
Or see this region's nucleotide sequence