Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4326

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4324 and PfGW456L13_4325 are separated by 43 nucleotidesPfGW456L13_4325 and PfGW456L13_4326 are separated by 12 nucleotidesPfGW456L13_4326 and PfGW456L13_4327 are separated by 29 nucleotides PfGW456L13_4324 - Chromosome (plasmid) partitioning protein ParA, at 4,835,608 to 4,836,396 _4324 PfGW456L13_4325 - Flagellar motor rotation protein MotB, at 4,836,440 to 4,837,330 _4325 PfGW456L13_4326 - Flagellar motor rotation protein MotA, at 4,837,343 to 4,838,053 _4326 PfGW456L13_4327 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 4,838,083 to 4,839,207 _4327 Position (kb) 4837 4838 4839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4836.436 kb on + strandat 4836.436 kb on + strandat 4836.436 kb on + strandat 4836.437 kb on - strandat 4836.437 kb on - strandat 4836.449 kb on + strandat 4836.450 kb on - strandat 4836.931 kb on + strand, within PfGW456L13_4325at 4836.931 kb on + strand, within PfGW456L13_4325at 4836.931 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.197 kb on + strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.198 kb on - strand, within PfGW456L13_4325at 4837.227 kb on + strand, within PfGW456L13_4325at 4837.227 kb on + strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.228 kb on - strand, within PfGW456L13_4325at 4837.272 kb on + strandat 4837.273 kb on - strandat 4837.297 kb on + strandat 4837.336 kb on + strandat 4837.336 kb on + strandat 4837.337 kb on - strandat 4837.337 kb on - strandat 4837.337 kb on - strandat 4837.449 kb on - strand, within PfGW456L13_4326at 4837.449 kb on - strand, within PfGW456L13_4326at 4837.449 kb on - strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.512 kb on + strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.513 kb on - strand, within PfGW456L13_4326at 4837.516 kb on + strand, within PfGW456L13_4326at 4837.517 kb on - strand, within PfGW456L13_4326at 4837.686 kb on + strand, within PfGW456L13_4326at 4837.686 kb on + strand, within PfGW456L13_4326at 4837.686 kb on + strand, within PfGW456L13_4326at 4837.687 kb on - strand, within PfGW456L13_4326at 4837.764 kb on + strand, within PfGW456L13_4326at 4837.764 kb on + strand, within PfGW456L13_4326at 4837.764 kb on + strand, within PfGW456L13_4326at 4837.764 kb on + strand, within PfGW456L13_4326at 4837.764 kb on + strand, within PfGW456L13_4326at 4837.765 kb on - strand, within PfGW456L13_4326at 4837.765 kb on - strand, within PfGW456L13_4326at 4837.765 kb on - strand, within PfGW456L13_4326at 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.022 kb on + strandat 4838.023 kb on - strandat 4838.023 kb on - strandat 4838.023 kb on - strandat 4838.023 kb on - strandat 4838.023 kb on - strandat 4838.023 kb on - strandat 4838.072 kb on + strandat 4838.072 kb on + strandat 4838.088 kb on + strandat 4838.089 kb on - strandat 4838.089 kb on - strandat 4838.089 kb on - strandat 4838.129 kb on + strandat 4838.129 kb on + strandat 4838.129 kb on + strandat 4838.129 kb on + strandat 4838.129 kb on + strandat 4838.130 kb on - strandat 4838.177 kb on + strandat 4838.177 kb on + strandat 4838.177 kb on + strandat 4838.177 kb on + strandat 4838.178 kb on - strandat 4838.300 kb on + strand, within PfGW456L13_4327at 4838.300 kb on + strand, within PfGW456L13_4327at 4838.300 kb on + strand, within PfGW456L13_4327at 4838.301 kb on - strand, within PfGW456L13_4327at 4838.301 kb on - strand, within PfGW456L13_4327at 4838.345 kb on + strand, within PfGW456L13_4327at 4838.346 kb on - strand, within PfGW456L13_4327at 4838.346 kb on - strand, within PfGW456L13_4327at 4838.346 kb on - strand, within PfGW456L13_4327at 4838.448 kb on + strand, within PfGW456L13_4327at 4838.620 kb on - strand, within PfGW456L13_4327at 4838.730 kb on - strand, within PfGW456L13_4327at 4838.792 kb on + strand, within PfGW456L13_4327at 4838.792 kb on + strand, within PfGW456L13_4327at 4838.792 kb on + strand, within PfGW456L13_4327at 4838.793 kb on - strand, within PfGW456L13_4327at 4838.793 kb on - strand, within PfGW456L13_4327at 4839.041 kb on + strand, within PfGW456L13_4327at 4839.042 kb on - strand, within PfGW456L13_4327at 4839.042 kb on - strand, within PfGW456L13_4327

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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4,836,436 + -2.8
4,836,436 + -0.0
4,836,436 + +0.8
4,836,437 - +0.6
4,836,437 - +0.8
4,836,449 + -0.0
4,836,450 - +0.6
4,836,931 + PfGW456L13_4325 0.55 +0.9
4,836,931 + PfGW456L13_4325 0.55 +0.6
4,836,931 + PfGW456L13_4325 0.55 +1.4
4,837,197 + PfGW456L13_4325 0.85 -0.2
4,837,197 + PfGW456L13_4325 0.85 +0.4
4,837,197 + PfGW456L13_4325 0.85 -1.1
4,837,197 + PfGW456L13_4325 0.85 +0.9
4,837,197 + PfGW456L13_4325 0.85 -0.3
4,837,197 + PfGW456L13_4325 0.85 +1.2
4,837,198 - PfGW456L13_4325 0.85 -0.8
4,837,198 - PfGW456L13_4325 0.85 +0.9
4,837,198 - PfGW456L13_4325 0.85 +0.7
4,837,198 - PfGW456L13_4325 0.85 -1.0
4,837,198 - PfGW456L13_4325 0.85 -2.0
4,837,198 - PfGW456L13_4325 0.85 +0.5
4,837,227 + PfGW456L13_4325 0.88 +0.6
4,837,227 + PfGW456L13_4325 0.88 -0.3
4,837,228 - PfGW456L13_4325 0.88 -2.1
4,837,228 - PfGW456L13_4325 0.88 +0.0
4,837,228 - PfGW456L13_4325 0.88 -0.1
4,837,228 - PfGW456L13_4325 0.88 +0.1
4,837,228 - PfGW456L13_4325 0.88 -0.2
4,837,228 - PfGW456L13_4325 0.88 -0.6
4,837,272 + -0.3
4,837,273 - +1.3
4,837,297 + +2.0
4,837,336 + +0.0
4,837,336 + +0.5
4,837,337 - -0.6
4,837,337 - +1.1
4,837,337 - -1.8
4,837,449 - PfGW456L13_4326 0.15 -1.0
4,837,449 - PfGW456L13_4326 0.15 -0.5
4,837,449 - PfGW456L13_4326 0.15 +0.6
4,837,512 + PfGW456L13_4326 0.24 -0.5
4,837,512 + PfGW456L13_4326 0.24 +0.8
4,837,512 + PfGW456L13_4326 0.24 -0.8
4,837,512 + PfGW456L13_4326 0.24 +0.7
4,837,512 + PfGW456L13_4326 0.24 +0.7
4,837,512 + PfGW456L13_4326 0.24 +0.3
4,837,512 + PfGW456L13_4326 0.24 +0.4
4,837,513 - PfGW456L13_4326 0.24 -0.7
4,837,513 - PfGW456L13_4326 0.24 +0.3
4,837,513 - PfGW456L13_4326 0.24 +0.6
4,837,513 - PfGW456L13_4326 0.24 +0.0
4,837,513 - PfGW456L13_4326 0.24 -0.2
4,837,513 - PfGW456L13_4326 0.24 +0.9
4,837,513 - PfGW456L13_4326 0.24 -2.7
4,837,516 + PfGW456L13_4326 0.24 -0.4
4,837,517 - PfGW456L13_4326 0.24 -0.3
4,837,686 + PfGW456L13_4326 0.48 +0.5
4,837,686 + PfGW456L13_4326 0.48 -0.4
4,837,686 + PfGW456L13_4326 0.48 +0.3
4,837,687 - PfGW456L13_4326 0.48 -0.1
4,837,764 + PfGW456L13_4326 0.59 +0.9
4,837,764 + PfGW456L13_4326 0.59 +0.4
4,837,764 + PfGW456L13_4326 0.59 -0.2
4,837,764 + PfGW456L13_4326 0.59 +0.5
4,837,764 + PfGW456L13_4326 0.59 +1.6
4,837,765 - PfGW456L13_4326 0.59 -0.8
4,837,765 - PfGW456L13_4326 0.59 +0.6
4,837,765 - PfGW456L13_4326 0.59 +0.9
4,838,022 + +0.4
4,838,022 + +0.0
4,838,022 + -0.3
4,838,022 + +0.1
4,838,022 + -0.0
4,838,022 + +1.7
4,838,022 + -0.7
4,838,022 + -0.9
4,838,022 + -0.7
4,838,023 - +0.2
4,838,023 - -0.1
4,838,023 - -0.1
4,838,023 - -1.0
4,838,023 - +0.1
4,838,023 - +0.7
4,838,072 + +0.1
4,838,072 + -0.2
4,838,088 + -0.3
4,838,089 - -3.3
4,838,089 - -0.2
4,838,089 - -2.0
4,838,129 + -1.0
4,838,129 + +0.5
4,838,129 + -1.3
4,838,129 + -0.8
4,838,129 + -0.6
4,838,130 - +0.7
4,838,177 + +0.3
4,838,177 + -0.1
4,838,177 + +0.0
4,838,177 + +0.3
4,838,178 - -0.3
4,838,300 + PfGW456L13_4327 0.19 +0.5
4,838,300 + PfGW456L13_4327 0.19 +0.6
4,838,300 + PfGW456L13_4327 0.19 +0.1
4,838,301 - PfGW456L13_4327 0.19 -0.3
4,838,301 - PfGW456L13_4327 0.19 -0.1
4,838,345 + PfGW456L13_4327 0.23 +0.3
4,838,346 - PfGW456L13_4327 0.23 +0.0
4,838,346 - PfGW456L13_4327 0.23 +1.6
4,838,346 - PfGW456L13_4327 0.23 +2.2
4,838,448 + PfGW456L13_4327 0.32 -0.3
4,838,620 - PfGW456L13_4327 0.48 +1.3
4,838,730 - PfGW456L13_4327 0.58 -1.1
4,838,792 + PfGW456L13_4327 0.63 +0.2
4,838,792 + PfGW456L13_4327 0.63 -0.5
4,838,792 + PfGW456L13_4327 0.63 -0.8
4,838,793 - PfGW456L13_4327 0.63 -0.1
4,838,793 - PfGW456L13_4327 0.63 -0.9
4,839,041 + PfGW456L13_4327 0.85 +0.1
4,839,042 - PfGW456L13_4327 0.85 -0.7
4,839,042 - PfGW456L13_4327 0.85 +0.5

Or see this region's nucleotide sequence