Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1293

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1291 and PfGW456L13_1292 overlap by 11 nucleotidesPfGW456L13_1292 and PfGW456L13_1293 are separated by 139 nucleotidesPfGW456L13_1293 and PfGW456L13_1294 are separated by 70 nucleotides PfGW456L13_1291 - Biotin carboxylase (EC 6.3.4.14), at 1,429,533 to 1,430,615 _1291 PfGW456L13_1292 - Prolyl oligopeptidase family protein, at 1,430,605 to 1,431,363 _1292 PfGW456L13_1293 - Inner membrane protein YbhQ, at 1,431,503 to 1,432,405 _1293 PfGW456L13_1294 - Cardiolipin synthetase (EC 2.7.8.-), at 1,432,476 to 1,433,768 _1294 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -2 -1 0 1 2at 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.508 kb on + strandat 1430.509 kb on - strandat 1430.509 kb on - strandat 1430.509 kb on - strandat 1430.509 kb on - strandat 1430.509 kb on - strandat 1430.509 kb on - strandat 1430.547 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.586 kb on + strandat 1430.587 kb on - strandat 1430.587 kb on - strandat 1430.587 kb on - strandat 1430.587 kb on - strandat 1430.587 kb on - strandat 1430.604 kb on + strandat 1430.604 kb on + strandat 1430.605 kb on - strandat 1430.605 kb on - strandat 1430.605 kb on - strandat 1430.872 kb on + strand, within PfGW456L13_1292at 1430.872 kb on + strand, within PfGW456L13_1292at 1430.872 kb on + strand, within PfGW456L13_1292at 1430.873 kb on - strand, within PfGW456L13_1292at 1430.873 kb on - strand, within PfGW456L13_1292at 1430.904 kb on + strand, within PfGW456L13_1292at 1430.905 kb on - strand, within PfGW456L13_1292at 1430.935 kb on + strand, within PfGW456L13_1292at 1430.935 kb on + strand, within PfGW456L13_1292at 1430.945 kb on - strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.169 kb on + strand, within PfGW456L13_1292at 1431.170 kb on - strand, within PfGW456L13_1292at 1431.170 kb on - strand, within PfGW456L13_1292at 1431.170 kb on - strand, within PfGW456L13_1292at 1431.170 kb on - strand, within PfGW456L13_1292at 1431.289 kb on + strandat 1431.289 kb on + strandat 1431.289 kb on + strandat 1431.289 kb on + strandat 1431.290 kb on - strandat 1431.290 kb on - strandat 1431.290 kb on - strandat 1431.290 kb on - strandat 1431.348 kb on + strandat 1431.349 kb on - strandat 1431.349 kb on - strandat 1431.425 kb on + strandat 1431.425 kb on + strandat 1431.425 kb on + strandat 1431.425 kb on + strandat 1431.425 kb on + strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.426 kb on - strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.559 kb on - strandat 1431.559 kb on - strandat 1431.594 kb on + strand, within PfGW456L13_1293at 1431.594 kb on + strand, within PfGW456L13_1293at 1431.594 kb on + strand, within PfGW456L13_1293at 1431.757 kb on - strand, within PfGW456L13_1293at 1431.921 kb on + strand, within PfGW456L13_1293at 1431.941 kb on + strand, within PfGW456L13_1293at 1431.942 kb on - strand, within PfGW456L13_1293at 1432.001 kb on + strandat 1432.001 kb on + strand, within PfGW456L13_1293at 1432.001 kb on + strand, within PfGW456L13_1293at 1432.002 kb on - strand, within PfGW456L13_1293at 1432.002 kb on - strand, within PfGW456L13_1293at 1432.042 kb on - strand, within PfGW456L13_1293at 1432.042 kb on - strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.117 kb on - strand, within PfGW456L13_1293at 1432.117 kb on - strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.535 kb on + strandat 1432.536 kb on - strandat 1432.536 kb on - strandat 1432.776 kb on + strand, within PfGW456L13_1294at 1432.776 kb on + strand, within PfGW456L13_1294at 1432.777 kb on - strand, within PfGW456L13_1294at 1432.777 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.840 kb on + strand, within PfGW456L13_1294at 1432.841 kb on - strand, within PfGW456L13_1294at 1432.841 kb on - strand, within PfGW456L13_1294at 1432.867 kb on + strand, within PfGW456L13_1294at 1432.867 kb on + strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.874 kb on - strand, within PfGW456L13_1294at 1432.874 kb on - strand, within PfGW456L13_1294at 1432.999 kb on + strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.041 kb on - strand, within PfGW456L13_1294at 1433.050 kb on + strand, within PfGW456L13_1294at 1433.051 kb on - strand, within PfGW456L13_1294at 1433.093 kb on - strand, within PfGW456L13_1294at 1433.167 kb on + strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.251 kb on + strand, within PfGW456L13_1294at 1433.252 kb on - strand, within PfGW456L13_1294at 1433.252 kb on - strand, within PfGW456L13_1294

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,430,508 + +0.1
1,430,508 + +0.8
1,430,508 + -0.1
1,430,508 + +0.4
1,430,508 + -0.6
1,430,508 + +0.8
1,430,508 + +0.9
1,430,508 + -0.0
1,430,509 - +0.8
1,430,509 - +1.3
1,430,509 - +0.8
1,430,509 - +0.3
1,430,509 - -1.0
1,430,509 - +0.2
1,430,547 + -0.8
1,430,586 + -0.2
1,430,586 + -1.2
1,430,586 + -0.2
1,430,586 + -0.4
1,430,586 + +1.1
1,430,586 + -0.2
1,430,586 + -0.6
1,430,586 + -0.4
1,430,587 - -0.2
1,430,587 - +0.5
1,430,587 - +0.6
1,430,587 - -0.6
1,430,587 - -1.2
1,430,604 + -0.2
1,430,604 + -0.1
1,430,605 - +0.2
1,430,605 - -0.5
1,430,605 - +0.5
1,430,872 + PfGW456L13_1292 0.35 -0.1
1,430,872 + PfGW456L13_1292 0.35 -0.4
1,430,872 + PfGW456L13_1292 0.35 +1.0
1,430,873 - PfGW456L13_1292 0.35 -0.5
1,430,873 - PfGW456L13_1292 0.35 -0.8
1,430,904 + PfGW456L13_1292 0.39 -0.5
1,430,905 - PfGW456L13_1292 0.40 -1.1
1,430,935 + PfGW456L13_1292 0.43 -0.1
1,430,935 + PfGW456L13_1292 0.43 -0.2
1,430,945 - PfGW456L13_1292 0.45 -0.3
1,431,169 + PfGW456L13_1292 0.74 -0.6
1,431,169 + PfGW456L13_1292 0.74 +0.3
1,431,169 + PfGW456L13_1292 0.74 -0.6
1,431,169 + PfGW456L13_1292 0.74 +0.2
1,431,169 + PfGW456L13_1292 0.74 +0.1
1,431,169 + PfGW456L13_1292 0.74 -0.2
1,431,169 + PfGW456L13_1292 0.74 -0.4
1,431,169 + PfGW456L13_1292 0.74 +0.5
1,431,170 - PfGW456L13_1292 0.74 +0.5
1,431,170 - PfGW456L13_1292 0.74 -0.7
1,431,170 - PfGW456L13_1292 0.74 -0.1
1,431,170 - PfGW456L13_1292 0.74 +1.8
1,431,289 + -0.4
1,431,289 + -0.1
1,431,289 + -0.6
1,431,289 + -0.2
1,431,290 - -0.8
1,431,290 - +0.1
1,431,290 - +0.7
1,431,290 - -0.2
1,431,348 + -0.2
1,431,349 - +0.5
1,431,349 - +1.8
1,431,425 + -0.6
1,431,425 + +0.7
1,431,425 + -1.5
1,431,425 + -0.3
1,431,425 + +0.1
1,431,426 - +0.5
1,431,426 - +0.4
1,431,426 - -2.0
1,431,426 - +0.7
1,431,426 - +0.4
1,431,426 - -1.5
1,431,426 - +1.6
1,431,426 - -0.2
1,431,426 - -0.1
1,431,426 - -0.9
1,431,558 + +0.5
1,431,558 + +0.6
1,431,558 + +0.1
1,431,558 + -0.4
1,431,558 + +0.3
1,431,558 + +0.3
1,431,558 + +0.9
1,431,559 - +0.1
1,431,559 - -0.3
1,431,594 + PfGW456L13_1293 0.10 -0.1
1,431,594 + PfGW456L13_1293 0.10 -0.4
1,431,594 + PfGW456L13_1293 0.10 +1.3
1,431,757 - PfGW456L13_1293 0.28 +0.3
1,431,921 + PfGW456L13_1293 0.46 +0.6
1,431,941 + PfGW456L13_1293 0.49 -0.4
1,431,942 - PfGW456L13_1293 0.49 +1.7
1,432,001 + +0.5
1,432,001 + PfGW456L13_1293 0.55 -0.2
1,432,001 + PfGW456L13_1293 0.55 -0.6
1,432,002 - PfGW456L13_1293 0.55 +0.3
1,432,002 - PfGW456L13_1293 0.55 +0.2
1,432,042 - PfGW456L13_1293 0.60 +1.1
1,432,042 - PfGW456L13_1293 0.60 -0.3
1,432,116 + PfGW456L13_1293 0.68 +0.1
1,432,116 + PfGW456L13_1293 0.68 -0.0
1,432,116 + PfGW456L13_1293 0.68 +0.6
1,432,117 - PfGW456L13_1293 0.68 +0.8
1,432,117 - PfGW456L13_1293 0.68 +1.1
1,432,176 + PfGW456L13_1293 0.75 +0.3
1,432,176 + PfGW456L13_1293 0.75 +0.3
1,432,176 + PfGW456L13_1293 0.75 +0.6
1,432,177 - PfGW456L13_1293 0.75 -0.9
1,432,177 - PfGW456L13_1293 0.75 -1.1
1,432,177 - PfGW456L13_1293 0.75 -0.6
1,432,230 + PfGW456L13_1293 0.81 +0.4
1,432,230 + PfGW456L13_1293 0.81 +1.9
1,432,230 + PfGW456L13_1293 0.81 -0.4
1,432,230 + PfGW456L13_1293 0.81 +0.9
1,432,230 + PfGW456L13_1293 0.81 +0.6
1,432,230 + PfGW456L13_1293 0.81 -0.7
1,432,230 + PfGW456L13_1293 0.81 -1.3
1,432,230 + PfGW456L13_1293 0.81 +0.8
1,432,230 + PfGW456L13_1293 0.81 +0.9
1,432,230 + PfGW456L13_1293 0.81 -0.2
1,432,230 + PfGW456L13_1293 0.81 +0.2
1,432,231 - PfGW456L13_1293 0.81 +0.3
1,432,231 - PfGW456L13_1293 0.81 +0.1
1,432,231 - PfGW456L13_1293 0.81 +0.6
1,432,231 - PfGW456L13_1293 0.81 -0.2
1,432,231 - PfGW456L13_1293 0.81 +1.0
1,432,231 - PfGW456L13_1293 0.81 -0.2
1,432,231 - PfGW456L13_1293 0.81 -0.5
1,432,231 - PfGW456L13_1293 0.81 -0.9
1,432,231 - PfGW456L13_1293 0.81 -0.4
1,432,231 - PfGW456L13_1293 0.81 +0.8
1,432,231 - PfGW456L13_1293 0.81 +1.1
1,432,231 - PfGW456L13_1293 0.81 +1.5
1,432,231 - PfGW456L13_1293 0.81 -0.0
1,432,260 + PfGW456L13_1293 0.84 +0.0
1,432,260 + PfGW456L13_1293 0.84 +0.8
1,432,260 + PfGW456L13_1293 0.84 +0.3
1,432,261 - PfGW456L13_1293 0.84 -0.9
1,432,261 - PfGW456L13_1293 0.84 -0.8
1,432,261 - PfGW456L13_1293 0.84 -0.4
1,432,261 - PfGW456L13_1293 0.84 +0.0
1,432,261 - PfGW456L13_1293 0.84 +0.7
1,432,261 - PfGW456L13_1293 0.84 +1.0
1,432,535 + -0.3
1,432,536 - +1.3
1,432,536 - -1.2
1,432,776 + PfGW456L13_1294 0.23 -1.0
1,432,776 + PfGW456L13_1294 0.23 +0.4
1,432,777 - PfGW456L13_1294 0.23 -1.3
1,432,777 - PfGW456L13_1294 0.23 +0.8
1,432,835 - PfGW456L13_1294 0.28 -0.2
1,432,835 - PfGW456L13_1294 0.28 +0.5
1,432,835 - PfGW456L13_1294 0.28 +0.3
1,432,840 + PfGW456L13_1294 0.28 -0.2
1,432,841 - PfGW456L13_1294 0.28 +0.2
1,432,841 - PfGW456L13_1294 0.28 +0.2
1,432,867 + PfGW456L13_1294 0.30 +0.3
1,432,867 + PfGW456L13_1294 0.30 -1.0
1,432,868 - PfGW456L13_1294 0.30 +0.0
1,432,868 - PfGW456L13_1294 0.30 -0.3
1,432,868 - PfGW456L13_1294 0.30 +0.9
1,432,868 - PfGW456L13_1294 0.30 -0.4
1,432,873 + PfGW456L13_1294 0.31 -0.0
1,432,873 + PfGW456L13_1294 0.31 +0.3
1,432,873 + PfGW456L13_1294 0.31 +0.1
1,432,873 + PfGW456L13_1294 0.31 +0.3
1,432,873 + PfGW456L13_1294 0.31 +0.3
1,432,874 - PfGW456L13_1294 0.31 +0.5
1,432,874 - PfGW456L13_1294 0.31 -0.0
1,432,999 + PfGW456L13_1294 0.40 -0.1
1,433,000 - PfGW456L13_1294 0.41 +0.2
1,433,000 - PfGW456L13_1294 0.41 +0.1
1,433,000 - PfGW456L13_1294 0.41 +1.0
1,433,000 - PfGW456L13_1294 0.41 -0.8
1,433,040 + PfGW456L13_1294 0.44 -0.2
1,433,040 + PfGW456L13_1294 0.44 +0.4
1,433,040 + PfGW456L13_1294 0.44 -0.7
1,433,041 - PfGW456L13_1294 0.44 +1.5
1,433,050 + PfGW456L13_1294 0.44 -0.4
1,433,051 - PfGW456L13_1294 0.44 -0.1
1,433,093 - PfGW456L13_1294 0.48 +2.5
1,433,167 + PfGW456L13_1294 0.53 -0.1
1,433,168 - PfGW456L13_1294 0.54 +1.9
1,433,168 - PfGW456L13_1294 0.54 -0.8
1,433,168 - PfGW456L13_1294 0.54 -0.5
1,433,251 + PfGW456L13_1294 0.60 +0.8
1,433,252 - PfGW456L13_1294 0.60 -0.1
1,433,252 - PfGW456L13_1294 0.60 +0.9

Or see this region's nucleotide sequence