Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1151

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1149 and PfGW456L13_1150 overlap by 8 nucleotidesPfGW456L13_1150 and PfGW456L13_1151 overlap by 4 nucleotidesPfGW456L13_1151 and PfGW456L13_1152 are separated by 123 nucleotidesPfGW456L13_1152 and PfGW456L13_1153 are separated by 276 nucleotides PfGW456L13_1149 - Biotin synthesis protein BioH, at 1,277,828 to 1,278,559 _1149 PfGW456L13_1150 - Biotin synthesis protein BioC, at 1,278,552 to 1,279,364 _1150 PfGW456L13_1151 - Dethiobiotin synthetase (EC 6.3.3.3), at 1,279,361 to 1,280,041 _1151 PfGW456L13_1152 - FIG00954771: hypothetical protein, at 1,280,165 to 1,280,461 _1152 PfGW456L13_1153 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 1,280,738 to 1,282,543 _1153 Position (kb) 1279 1280 1281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1278.562 kb on + strandat 1278.562 kb on + strandat 1278.563 kb on - strandat 1278.563 kb on - strandat 1278.607 kb on + strandat 1278.607 kb on + strandat 1278.608 kb on - strandat 1278.639 kb on + strand, within PfGW456L13_1150at 1278.639 kb on + strand, within PfGW456L13_1150at 1278.639 kb on + strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.640 kb on - strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.852 kb on + strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.853 kb on - strand, within PfGW456L13_1150at 1278.977 kb on - strand, within PfGW456L13_1150at 1278.992 kb on + strand, within PfGW456L13_1150at 1279.007 kb on + strand, within PfGW456L13_1150at 1279.008 kb on - strand, within PfGW456L13_1150at 1279.018 kb on + strand, within PfGW456L13_1150at 1279.064 kb on + strand, within PfGW456L13_1150at 1279.101 kb on + strand, within PfGW456L13_1150at 1279.102 kb on - strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.167 kb on + strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.168 kb on - strand, within PfGW456L13_1150at 1279.287 kb on + strandat 1279.287 kb on + strandat 1279.288 kb on - strandat 1279.288 kb on - strandat 1279.288 kb on - strandat 1279.288 kb on - strandat 1279.326 kb on + strandat 1279.326 kb on + strandat 1279.326 kb on + strandat 1279.326 kb on + strandat 1279.326 kb on + strandat 1279.327 kb on - strandat 1279.327 kb on - strandat 1279.327 kb on - strandat 1279.338 kb on + strandat 1279.374 kb on - strandat 1279.405 kb on + strandat 1279.504 kb on + strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.505 kb on - strand, within PfGW456L13_1151at 1279.565 kb on + strand, within PfGW456L13_1151at 1279.565 kb on + strand, within PfGW456L13_1151at 1279.565 kb on + strand, within PfGW456L13_1151at 1279.565 kb on + strand, within PfGW456L13_1151at 1279.566 kb on - strand, within PfGW456L13_1151at 1279.699 kb on + strand, within PfGW456L13_1151at 1279.806 kb on + strand, within PfGW456L13_1151at 1279.806 kb on + strand, within PfGW456L13_1151at 1279.806 kb on + strand, within PfGW456L13_1151at 1279.807 kb on - strand, within PfGW456L13_1151at 1279.807 kb on - strand, within PfGW456L13_1151at 1279.819 kb on + strand, within PfGW456L13_1151at 1279.819 kb on + strand, within PfGW456L13_1151at 1279.820 kb on - strand, within PfGW456L13_1151at 1279.820 kb on - strand, within PfGW456L13_1151at 1279.820 kb on - strand, within PfGW456L13_1151at 1279.978 kb on + strandat 1280.192 kb on + strandat 1280.192 kb on + strandat 1280.193 kb on - strandat 1280.449 kb on + strandat 1280.450 kb on - strandat 1280.516 kb on + strandat 1280.516 kb on + strandat 1280.517 kb on - strandat 1280.517 kb on - strandat 1280.535 kb on + strandat 1280.536 kb on - strandat 1280.536 kb on - strandat 1280.536 kb on - strandat 1280.657 kb on - strandat 1280.716 kb on - strandat 1280.731 kb on + strandat 1280.737 kb on + strandat 1280.747 kb on + strandat 1280.748 kb on - strandat 1280.748 kb on - strandat 1280.767 kb on + strandat 1280.810 kb on + strandat 1280.810 kb on + strandat 1280.810 kb on + strandat 1280.811 kb on - strandat 1280.896 kb on - strandat 1280.896 kb on - strandat 1280.957 kb on - strand, within PfGW456L13_1153at 1280.984 kb on + strand, within PfGW456L13_1153at 1280.984 kb on + strand, within PfGW456L13_1153at 1280.984 kb on + strand, within PfGW456L13_1153at 1280.985 kb on - strand, within PfGW456L13_1153at 1281.030 kb on + strand, within PfGW456L13_1153at 1281.030 kb on + strand, within PfGW456L13_1153at 1281.031 kb on - strand, within PfGW456L13_1153at 1281.031 kb on - strand, within PfGW456L13_1153at 1281.031 kb on - strand, within PfGW456L13_1153at 1281.031 kb on - strand, within PfGW456L13_1153

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,278,562 + -1.9
1,278,562 + -0.7
1,278,563 - -1.4
1,278,563 - -1.4
1,278,607 + -0.4
1,278,607 + -1.2
1,278,608 - -1.4
1,278,639 + PfGW456L13_1150 0.11 -0.2
1,278,639 + PfGW456L13_1150 0.11 -2.5
1,278,639 + PfGW456L13_1150 0.11 -0.2
1,278,640 - PfGW456L13_1150 0.11 -3.0
1,278,640 - PfGW456L13_1150 0.11 -0.6
1,278,640 - PfGW456L13_1150 0.11 -0.9
1,278,640 - PfGW456L13_1150 0.11 -3.6
1,278,852 + PfGW456L13_1150 0.37 -1.3
1,278,852 + PfGW456L13_1150 0.37 -1.2
1,278,852 + PfGW456L13_1150 0.37 -3.8
1,278,852 + PfGW456L13_1150 0.37 -1.4
1,278,852 + PfGW456L13_1150 0.37 -1.6
1,278,852 + PfGW456L13_1150 0.37 -2.8
1,278,852 + PfGW456L13_1150 0.37 -1.6
1,278,852 + PfGW456L13_1150 0.37 -1.9
1,278,852 + PfGW456L13_1150 0.37 -2.2
1,278,852 + PfGW456L13_1150 0.37 -3.0
1,278,852 + PfGW456L13_1150 0.37 -3.4
1,278,853 - PfGW456L13_1150 0.37 -0.0
1,278,853 - PfGW456L13_1150 0.37 -0.2
1,278,853 - PfGW456L13_1150 0.37 -0.9
1,278,853 - PfGW456L13_1150 0.37 -0.6
1,278,853 - PfGW456L13_1150 0.37 -2.8
1,278,853 - PfGW456L13_1150 0.37 -1.7
1,278,853 - PfGW456L13_1150 0.37 +0.3
1,278,853 - PfGW456L13_1150 0.37 -2.9
1,278,853 - PfGW456L13_1150 0.37 -1.6
1,278,853 - PfGW456L13_1150 0.37 -2.4
1,278,853 - PfGW456L13_1150 0.37 -1.7
1,278,977 - PfGW456L13_1150 0.52 -0.4
1,278,992 + PfGW456L13_1150 0.54 -1.8
1,279,007 + PfGW456L13_1150 0.56 -1.6
1,279,008 - PfGW456L13_1150 0.56 -1.3
1,279,018 + PfGW456L13_1150 0.57 -2.9
1,279,064 + PfGW456L13_1150 0.63 -2.3
1,279,101 + PfGW456L13_1150 0.68 -2.3
1,279,102 - PfGW456L13_1150 0.68 -2.4
1,279,167 + PfGW456L13_1150 0.76 -1.7
1,279,167 + PfGW456L13_1150 0.76 -3.8
1,279,167 + PfGW456L13_1150 0.76 -2.9
1,279,167 + PfGW456L13_1150 0.76 -2.5
1,279,167 + PfGW456L13_1150 0.76 -3.9
1,279,167 + PfGW456L13_1150 0.76 -2.2
1,279,167 + PfGW456L13_1150 0.76 -1.5
1,279,167 + PfGW456L13_1150 0.76 -1.5
1,279,168 - PfGW456L13_1150 0.76 -4.1
1,279,168 - PfGW456L13_1150 0.76 -1.2
1,279,168 - PfGW456L13_1150 0.76 -2.0
1,279,168 - PfGW456L13_1150 0.76 -1.4
1,279,168 - PfGW456L13_1150 0.76 -2.8
1,279,168 - PfGW456L13_1150 0.76 -3.0
1,279,287 + -1.9
1,279,287 + -1.8
1,279,288 - -2.3
1,279,288 - -1.7
1,279,288 - -1.5
1,279,288 - -2.1
1,279,326 + -2.8
1,279,326 + -2.0
1,279,326 + -3.0
1,279,326 + -2.3
1,279,326 + -1.2
1,279,327 - -0.8
1,279,327 - -1.4
1,279,327 - -3.5
1,279,338 + -3.1
1,279,374 - -2.6
1,279,405 + -3.0
1,279,504 + PfGW456L13_1151 0.21 -2.4
1,279,505 - PfGW456L13_1151 0.21 -1.5
1,279,505 - PfGW456L13_1151 0.21 -3.9
1,279,505 - PfGW456L13_1151 0.21 -1.7
1,279,505 - PfGW456L13_1151 0.21 -2.5
1,279,505 - PfGW456L13_1151 0.21 -1.9
1,279,505 - PfGW456L13_1151 0.21 -1.2
1,279,565 + PfGW456L13_1151 0.30 -2.8
1,279,565 + PfGW456L13_1151 0.30 -2.9
1,279,565 + PfGW456L13_1151 0.30 -1.2
1,279,565 + PfGW456L13_1151 0.30 -3.6
1,279,566 - PfGW456L13_1151 0.30 -2.6
1,279,699 + PfGW456L13_1151 0.50 -3.7
1,279,806 + PfGW456L13_1151 0.65 -3.0
1,279,806 + PfGW456L13_1151 0.65 -2.5
1,279,806 + PfGW456L13_1151 0.65 -1.7
1,279,807 - PfGW456L13_1151 0.65 -2.6
1,279,807 - PfGW456L13_1151 0.65 -2.6
1,279,819 + PfGW456L13_1151 0.67 -3.1
1,279,819 + PfGW456L13_1151 0.67 -3.7
1,279,820 - PfGW456L13_1151 0.67 -2.6
1,279,820 - PfGW456L13_1151 0.67 -0.8
1,279,820 - PfGW456L13_1151 0.67 -2.8
1,279,978 + -2.6
1,280,192 + +0.2
1,280,192 + +1.2
1,280,193 - +0.0
1,280,449 + +0.8
1,280,450 - +1.3
1,280,516 + +0.5
1,280,516 + -0.3
1,280,517 - -0.3
1,280,517 - -1.1
1,280,535 + -0.0
1,280,536 - +0.1
1,280,536 - -0.8
1,280,536 - -0.4
1,280,657 - -0.3
1,280,716 - -1.0
1,280,731 + +0.7
1,280,737 + -0.8
1,280,747 + +0.2
1,280,748 - -0.4
1,280,748 - -1.7
1,280,767 + -1.6
1,280,810 + -1.8
1,280,810 + -0.6
1,280,810 + -0.4
1,280,811 - -0.7
1,280,896 - -1.1
1,280,896 - -0.7
1,280,957 - PfGW456L13_1153 0.12 -2.6
1,280,984 + PfGW456L13_1153 0.14 -0.8
1,280,984 + PfGW456L13_1153 0.14 -3.4
1,280,984 + PfGW456L13_1153 0.14 -0.8
1,280,985 - PfGW456L13_1153 0.14 -1.7
1,281,030 + PfGW456L13_1153 0.16 -0.3
1,281,030 + PfGW456L13_1153 0.16 +0.8
1,281,031 - PfGW456L13_1153 0.16 -0.2
1,281,031 - PfGW456L13_1153 0.16 -0.7
1,281,031 - PfGW456L13_1153 0.16 -3.0
1,281,031 - PfGW456L13_1153 0.16 +0.2

Or see this region's nucleotide sequence