Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28565

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS28560 and PFLU_RS28565 are separated by 61 nucleotidesPFLU_RS28565 and PFLU_RS28570 are separated by 69 nucleotides PFLU_RS28560: PFLU_RS28560 - L-cystine transporter, at 6,354,886 to 6,356,277 _RS28560 PFLU_RS28565: PFLU_RS28565 - dihydrofolate reductase, at 6,356,339 to 6,356,884 _RS28565 PFLU_RS28570: PFLU_RS28570 - DUF2868 domain-containing protein, at 6,356,954 to 6,358,333 _RS28570 Position (kb) 6356 6357Strain fitness (log2 ratio) -1 0 1at 6355.345 kb on + strand, within PFLU_RS28560at 6355.345 kb on + strand, within PFLU_RS28560at 6355.346 kb on - strand, within PFLU_RS28560at 6355.600 kb on + strand, within PFLU_RS28560at 6355.687 kb on + strand, within PFLU_RS28560at 6355.687 kb on + strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6355.688 kb on - strand, within PFLU_RS28560at 6356.084 kb on + strand, within PFLU_RS28560at 6356.084 kb on + strand, within PFLU_RS28560at 6356.085 kb on - strand, within PFLU_RS28560at 6356.278 kb on + strandat 6356.896 kb on + strandat 6357.000 kb on + strandat 6357.001 kb on - strandat 6357.430 kb on - strand, within PFLU_RS28570at 6357.430 kb on - strand, within PFLU_RS28570at 6357.430 kb on - strand, within PFLU_RS28570at 6357.529 kb on + strand, within PFLU_RS28570at 6357.530 kb on - strand, within PFLU_RS28570at 6357.530 kb on - strand, within PFLU_RS28570at 6357.789 kb on + strand, within PFLU_RS28570

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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6,355,345 + PFLU_RS28560 0.33 -0.9
6,355,345 + PFLU_RS28560 0.33 +0.4
6,355,346 - PFLU_RS28560 0.33 -0.0
6,355,600 + PFLU_RS28560 0.51 -0.0
6,355,687 + PFLU_RS28560 0.58 +0.2
6,355,687 + PFLU_RS28560 0.58 +0.3
6,355,688 - PFLU_RS28560 0.58 +0.2
6,355,688 - PFLU_RS28560 0.58 +0.6
6,355,688 - PFLU_RS28560 0.58 +0.1
6,356,084 + PFLU_RS28560 0.86 +0.2
6,356,084 + PFLU_RS28560 0.86 +0.0
6,356,085 - PFLU_RS28560 0.86 -0.1
6,356,278 + +0.2
6,356,896 + +0.0
6,357,000 + -0.2
6,357,001 - +1.4
6,357,430 - PFLU_RS28570 0.34 -0.7
6,357,430 - PFLU_RS28570 0.34 +0.9
6,357,430 - PFLU_RS28570 0.34 +0.0
6,357,529 + PFLU_RS28570 0.42 -0.6
6,357,530 - PFLU_RS28570 0.42 +0.7
6,357,530 - PFLU_RS28570 0.42 +0.3
6,357,789 + PFLU_RS28570 0.61 -0.4

Or see this region's nucleotide sequence