Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17920

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS17915 and PFLU_RS17920 are separated by 1 nucleotidesPFLU_RS17920 and PFLU_RS17925 are separated by 19 nucleotides PFLU_RS17915: PFLU_RS17915 - glycosyltransferase family 4 protein, at 4,066,819 to 4,068,051 _RS17915 PFLU_RS17920: PFLU_RS17920 - acyltransferase, at 4,068,053 to 4,068,616 _RS17920 PFLU_RS17925: PFLU_RS17925 - hypothetical protein, at 4,068,636 to 4,069,937 _RS17925 Position (kb) 4068 4069Strain fitness (log2 ratio) -1 0 1at 4067.116 kb on + strand, within PFLU_RS17915at 4067.117 kb on - strand, within PFLU_RS17915at 4067.193 kb on + strand, within PFLU_RS17915at 4067.327 kb on + strand, within PFLU_RS17915at 4067.327 kb on + strand, within PFLU_RS17915at 4067.328 kb on - strand, within PFLU_RS17915at 4067.328 kb on - strand, within PFLU_RS17915at 4067.328 kb on - strand, within PFLU_RS17915at 4067.397 kb on - strand, within PFLU_RS17915at 4067.621 kb on + strand, within PFLU_RS17915at 4067.690 kb on + strand, within PFLU_RS17915at 4067.828 kb on - strand, within PFLU_RS17915at 4067.844 kb on - strand, within PFLU_RS17915at 4067.962 kb on - strandat 4068.001 kb on + strandat 4068.054 kb on + strandat 4068.054 kb on + strandat 4068.054 kb on + strandat 4068.054 kb on + strandat 4068.055 kb on - strandat 4068.055 kb on - strandat 4068.102 kb on + strandat 4068.102 kb on + strandat 4068.103 kb on - strandat 4068.106 kb on + strandat 4068.113 kb on - strand, within PFLU_RS17920at 4068.165 kb on + strand, within PFLU_RS17920at 4068.165 kb on + strand, within PFLU_RS17920at 4068.165 kb on + strand, within PFLU_RS17920at 4068.268 kb on - strand, within PFLU_RS17920at 4068.579 kb on + strandat 4068.724 kb on + strandat 4068.724 kb on + strandat 4068.725 kb on - strandat 4068.725 kb on - strandat 4068.746 kb on - strandat 4068.765 kb on + strandat 4068.821 kb on - strand, within PFLU_RS17925at 4068.851 kb on - strand, within PFLU_RS17925at 4068.961 kb on - strand, within PFLU_RS17925at 4068.961 kb on - strand, within PFLU_RS17925at 4069.063 kb on + strand, within PFLU_RS17925at 4069.512 kb on - strand, within PFLU_RS17925at 4069.512 kb on - strand, within PFLU_RS17925

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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4,067,116 + PFLU_RS17915 0.24 +0.2
4,067,117 - PFLU_RS17915 0.24 +0.5
4,067,193 + PFLU_RS17915 0.30 +0.5
4,067,327 + PFLU_RS17915 0.41 +0.5
4,067,327 + PFLU_RS17915 0.41 -0.3
4,067,328 - PFLU_RS17915 0.41 -0.4
4,067,328 - PFLU_RS17915 0.41 -0.4
4,067,328 - PFLU_RS17915 0.41 +0.3
4,067,397 - PFLU_RS17915 0.47 +0.6
4,067,621 + PFLU_RS17915 0.65 +1.6
4,067,690 + PFLU_RS17915 0.71 +1.2
4,067,828 - PFLU_RS17915 0.82 +0.8
4,067,844 - PFLU_RS17915 0.83 -0.6
4,067,962 - -0.1
4,068,001 + +0.2
4,068,054 + -1.5
4,068,054 + -0.5
4,068,054 + -0.2
4,068,054 + -0.4
4,068,055 - +0.5
4,068,055 - -0.5
4,068,102 + +0.0
4,068,102 + +0.2
4,068,103 - -1.4
4,068,106 + +0.7
4,068,113 - PFLU_RS17920 0.11 -0.3
4,068,165 + PFLU_RS17920 0.20 -0.1
4,068,165 + PFLU_RS17920 0.20 +0.5
4,068,165 + PFLU_RS17920 0.20 -0.3
4,068,268 - PFLU_RS17920 0.38 -0.6
4,068,579 + +0.4
4,068,724 + -0.4
4,068,724 + -0.0
4,068,725 - -1.2
4,068,725 - +0.7
4,068,746 - -0.4
4,068,765 + +0.6
4,068,821 - PFLU_RS17925 0.14 +0.8
4,068,851 - PFLU_RS17925 0.17 -0.6
4,068,961 - PFLU_RS17925 0.25 +0.3
4,068,961 - PFLU_RS17925 0.25 +0.6
4,069,063 + PFLU_RS17925 0.33 +0.2
4,069,512 - PFLU_RS17925 0.67 +0.8
4,069,512 - PFLU_RS17925 0.67 -0.0

Or see this region's nucleotide sequence