Experiment: Trisodium citrate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS07785 and PFLU_RS07790 are separated by 239 nucleotides PFLU_RS07790 and PFLU_RS30475 are separated by 39 nucleotides PFLU_RS30475 and PFLU_RS07795 are separated by 45 nucleotides PFLU_RS07795 and PFLU_RS07800 overlap by 1 nucleotides PFLU_RS07800 and PFLU_RS07805 are separated by 200 nucleotides
PFLU_RS07785: PFLU_RS07785 - VacJ family lipoprotein, at 1,732,877 to 1,733,566
_RS07785
PFLU_RS07790: PFLU_RS07790 - PilZ domain-containing protein, at 1,733,806 to 1,734,102
_RS07790
PFLU_RS30475: PFLU_RS30475 - hypothetical protein, at 1,734,142 to 1,734,333
_RS30475
PFLU_RS07795: PFLU_RS07795 - SpoIIE family protein phosphatase, at 1,734,379 to 1,735,560
_RS07795
PFLU_RS07800: PFLU_RS07800 - STAS domain-containing protein, at 1,735,560 to 1,736,042
_RS07800
PFLU_RS07805: PFLU_RS07805 - transaldolase, at 1,736,243 to 1,737,169
_RS07805
Position (kb) 1734
1735
1736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1733.381 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.387 kb on + strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.388 kb on - strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.389 kb on + strand, within PFLU_RS07785 at 1733.390 kb on - strand, within PFLU_RS07785 at 1733.390 kb on - strand, within PFLU_RS07785 at 1733.390 kb on - strand, within PFLU_RS07785 at 1733.390 kb on - strand, within PFLU_RS07785 at 1733.485 kb on + strand, within PFLU_RS07785 at 1733.485 kb on + strand, within PFLU_RS07785 at 1733.486 kb on - strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.489 kb on + strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.490 kb on - strand, within PFLU_RS07785 at 1733.511 kb on - strand at 1733.511 kb on - strand at 1733.564 kb on + strand at 1733.565 kb on - strand at 1733.622 kb on - strand at 1733.637 kb on - strand at 1733.637 kb on - strand at 1733.637 kb on - strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.751 kb on + strand at 1733.826 kb on + strand at 1733.826 kb on + strand at 1733.827 kb on - strand at 1733.866 kb on + strand, within PFLU_RS07790 at 1733.866 kb on + strand, within PFLU_RS07790 at 1733.923 kb on + strand, within PFLU_RS07790 at 1734.080 kb on + strand at 1734.081 kb on - strand at 1734.081 kb on - strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.102 kb on + strand at 1734.103 kb on - strand at 1734.103 kb on - strand at 1734.103 kb on - strand at 1734.103 kb on - strand at 1734.103 kb on - strand at 1734.115 kb on + strand at 1734.115 kb on + strand at 1734.116 kb on - strand at 1734.116 kb on - strand at 1734.116 kb on - strand at 1734.143 kb on + strand at 1734.143 kb on + strand at 1734.143 kb on + strand at 1734.144 kb on - strand at 1734.145 kb on + strand at 1734.146 kb on - strand at 1734.146 kb on - strand at 1734.167 kb on + strand, within PFLU_RS30475 at 1734.167 kb on + strand, within PFLU_RS30475 at 1734.167 kb on + strand, within PFLU_RS30475 at 1734.167 kb on + strand, within PFLU_RS30475 at 1734.168 kb on - strand, within PFLU_RS30475 at 1734.168 kb on - strand, within PFLU_RS30475 at 1734.168 kb on - strand, within PFLU_RS30475 at 1734.168 kb on - strand, within PFLU_RS30475 at 1734.235 kb on - strand, within PFLU_RS30475 at 1734.253 kb on + strand, within PFLU_RS30475 at 1734.253 kb on + strand, within PFLU_RS30475 at 1734.287 kb on + strand, within PFLU_RS30475 at 1734.287 kb on + strand, within PFLU_RS30475 at 1734.287 kb on + strand, within PFLU_RS30475 at 1734.288 kb on - strand, within PFLU_RS30475 at 1734.301 kb on + strand, within PFLU_RS30475 at 1734.317 kb on + strand at 1734.317 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1734.356 kb on + strand at 1736.057 kb on + strand at 1736.109 kb on - strand at 1736.116 kb on + strand at 1736.117 kb on - strand at 1736.117 kb on - strand at 1736.117 kb on - strand at 1736.117 kb on - strand at 1736.157 kb on + strand at 1736.157 kb on + strand at 1736.157 kb on + strand at 1736.157 kb on + strand at 1736.157 kb on + strand at 1736.157 kb on + strand at 1736.158 kb on - strand at 1736.217 kb on - strand at 1736.410 kb on + strand, within PFLU_RS07805 at 1736.410 kb on + strand, within PFLU_RS07805 at 1736.410 kb on + strand, within PFLU_RS07805 at 1736.410 kb on + strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.411 kb on - strand, within PFLU_RS07805 at 1736.541 kb on + strand, within PFLU_RS07805 at 1736.541 kb on + strand, within PFLU_RS07805 at 1736.542 kb on - strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.556 kb on + strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.557 kb on - strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.559 kb on + strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805 at 1736.560 kb on - strand, within PFLU_RS07805
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS remove 1,733,381 + PFLU_RS07785 0.73 -2.5 1,733,387 + PFLU_RS07785 0.74 -1.1 1,733,387 + PFLU_RS07785 0.74 +0.3 1,733,387 + PFLU_RS07785 0.74 -1.2 1,733,387 + PFLU_RS07785 0.74 -1.7 1,733,387 + PFLU_RS07785 0.74 +0.0 1,733,387 + PFLU_RS07785 0.74 -0.3 1,733,387 + PFLU_RS07785 0.74 +0.0 1,733,388 - PFLU_RS07785 0.74 -1.6 1,733,388 - PFLU_RS07785 0.74 -2.7 1,733,388 - PFLU_RS07785 0.74 -1.0 1,733,388 - PFLU_RS07785 0.74 -1.9 1,733,388 - PFLU_RS07785 0.74 -1.4 1,733,388 - PFLU_RS07785 0.74 -0.3 1,733,388 - PFLU_RS07785 0.74 -1.1 1,733,389 + PFLU_RS07785 0.74 +0.5 1,733,389 + PFLU_RS07785 0.74 -0.9 1,733,389 + PFLU_RS07785 0.74 -2.8 1,733,389 + PFLU_RS07785 0.74 -0.9 1,733,389 + PFLU_RS07785 0.74 +0.6 1,733,389 + PFLU_RS07785 0.74 -0.4 1,733,390 - PFLU_RS07785 0.74 -1.6 1,733,390 - PFLU_RS07785 0.74 -1.0 1,733,390 - PFLU_RS07785 0.74 -0.4 1,733,390 - PFLU_RS07785 0.74 -0.3 1,733,485 + PFLU_RS07785 0.88 -3.0 1,733,485 + PFLU_RS07785 0.88 -2.3 1,733,486 - PFLU_RS07785 0.88 -1.1 1,733,489 + PFLU_RS07785 0.89 -2.4 1,733,489 + PFLU_RS07785 0.89 -2.1 1,733,489 + PFLU_RS07785 0.89 -2.0 1,733,489 + PFLU_RS07785 0.89 -1.8 1,733,489 + PFLU_RS07785 0.89 -0.9 1,733,489 + PFLU_RS07785 0.89 -1.7 1,733,489 + PFLU_RS07785 0.89 -0.4 1,733,489 + PFLU_RS07785 0.89 -3.3 1,733,489 + PFLU_RS07785 0.89 -2.9 1,733,489 + PFLU_RS07785 0.89 +0.0 1,733,489 + PFLU_RS07785 0.89 -1.9 1,733,490 - PFLU_RS07785 0.89 -0.5 1,733,490 - PFLU_RS07785 0.89 -0.4 1,733,490 - PFLU_RS07785 0.89 -2.2 1,733,490 - PFLU_RS07785 0.89 -1.5 1,733,490 - PFLU_RS07785 0.89 -0.1 1,733,490 - PFLU_RS07785 0.89 +0.6 1,733,490 - PFLU_RS07785 0.89 +0.0 1,733,490 - PFLU_RS07785 0.89 -1.0 1,733,490 - PFLU_RS07785 0.89 -1.0 1,733,490 - PFLU_RS07785 0.89 -0.9 1,733,490 - PFLU_RS07785 0.89 -1.1 1,733,511 - -0.9 1,733,511 - -0.3 1,733,564 + -0.0 1,733,565 - -0.5 1,733,622 - +0.0 1,733,637 - +0.8 1,733,637 - -1.1 1,733,637 - -1.2 1,733,751 + -0.8 1,733,751 + +0.3 1,733,751 + +0.1 1,733,751 + -0.3 1,733,751 + -1.2 1,733,751 + +0.7 1,733,751 + +0.3 1,733,751 + -0.9 1,733,826 + +1.6 1,733,826 + -1.1 1,733,827 - +0.9 1,733,866 + PFLU_RS07790 0.20 -1.8 1,733,866 + PFLU_RS07790 0.20 -2.6 1,733,923 + PFLU_RS07790 0.39 -0.4 1,734,080 + +0.0 1,734,081 - -0.0 1,734,081 - +0.5 1,734,102 + -2.6 1,734,102 + -0.1 1,734,102 + +0.1 1,734,102 + +0.0 1,734,102 + -0.6 1,734,102 + -0.2 1,734,102 + -0.4 1,734,102 + -1.0 1,734,103 - +0.3 1,734,103 - +0.6 1,734,103 - -0.5 1,734,103 - +1.4 1,734,103 - -0.6 1,734,115 + -0.3 1,734,115 + -1.0 1,734,116 - +0.2 1,734,116 - +0.4 1,734,116 - +0.3 1,734,143 + +2.1 1,734,143 + +0.9 1,734,143 + +0.8 1,734,144 - -2.0 1,734,145 + -0.2 1,734,146 - -0.7 1,734,146 - +1.0 1,734,167 + PFLU_RS30475 0.13 -0.7 1,734,167 + PFLU_RS30475 0.13 -1.5 1,734,167 + PFLU_RS30475 0.13 -0.6 1,734,167 + PFLU_RS30475 0.13 -0.4 1,734,168 - PFLU_RS30475 0.14 +0.3 1,734,168 - PFLU_RS30475 0.14 +0.2 1,734,168 - PFLU_RS30475 0.14 -0.4 1,734,168 - PFLU_RS30475 0.14 -0.7 1,734,235 - PFLU_RS30475 0.48 +0.6 1,734,253 + PFLU_RS30475 0.58 +0.5 1,734,253 + PFLU_RS30475 0.58 +1.6 1,734,287 + PFLU_RS30475 0.76 -0.6 1,734,287 + PFLU_RS30475 0.76 -1.6 1,734,287 + PFLU_RS30475 0.76 -1.9 1,734,288 - PFLU_RS30475 0.76 +0.6 1,734,301 + PFLU_RS30475 0.83 -1.3 1,734,317 + -1.0 1,734,317 + -1.7 1,734,356 + +1.9 1,734,356 + +1.2 1,734,356 + +0.0 1,734,356 + -1.7 1,734,356 + +0.3 1,734,356 + -0.9 1,734,356 + +1.1 1,736,057 + +0.2 1,736,109 - -2.0 1,736,116 + +0.8 1,736,117 - +0.6 1,736,117 - +1.0 1,736,117 - -0.4 1,736,117 - -0.1 1,736,157 + -0.2 1,736,157 + +0.4 1,736,157 + +1.4 1,736,157 + -2.3 1,736,157 + -0.3 1,736,157 + -0.2 1,736,158 - -0.9 1,736,217 - +0.2 1,736,410 + PFLU_RS07805 0.18 +1.7 1,736,410 + PFLU_RS07805 0.18 +0.8 1,736,410 + PFLU_RS07805 0.18 +0.0 1,736,410 + PFLU_RS07805 0.18 +0.0 1,736,411 - PFLU_RS07805 0.18 +0.2 1,736,411 - PFLU_RS07805 0.18 -0.3 1,736,411 - PFLU_RS07805 0.18 -2.4 1,736,411 - PFLU_RS07805 0.18 +0.6 1,736,411 - PFLU_RS07805 0.18 -1.5 1,736,411 - PFLU_RS07805 0.18 +0.5 1,736,541 + PFLU_RS07805 0.32 -0.1 1,736,541 + PFLU_RS07805 0.32 -0.8 1,736,542 - PFLU_RS07805 0.32 -1.2 1,736,556 + PFLU_RS07805 0.34 -2.6 1,736,556 + PFLU_RS07805 0.34 -1.3 1,736,556 + PFLU_RS07805 0.34 -0.5 1,736,556 + PFLU_RS07805 0.34 -3.0 1,736,556 + PFLU_RS07805 0.34 +0.3 1,736,556 + PFLU_RS07805 0.34 -0.6 1,736,556 + PFLU_RS07805 0.34 +0.8 1,736,557 - PFLU_RS07805 0.34 +0.6 1,736,557 - PFLU_RS07805 0.34 +0.1 1,736,557 - PFLU_RS07805 0.34 -0.7 1,736,557 - PFLU_RS07805 0.34 -0.3 1,736,557 - PFLU_RS07805 0.34 -0.7 1,736,557 - PFLU_RS07805 0.34 -1.0 1,736,557 - PFLU_RS07805 0.34 -0.2 1,736,557 - PFLU_RS07805 0.34 -2.0 1,736,557 - PFLU_RS07805 0.34 -1.9 1,736,559 + PFLU_RS07805 0.34 -0.2 1,736,559 + PFLU_RS07805 0.34 +0.6 1,736,559 + PFLU_RS07805 0.34 -1.4 1,736,559 + PFLU_RS07805 0.34 -1.7 1,736,559 + PFLU_RS07805 0.34 +0.6 1,736,559 + PFLU_RS07805 0.34 -0.2 1,736,559 + PFLU_RS07805 0.34 +0.5 1,736,559 + PFLU_RS07805 0.34 -0.6 1,736,559 + PFLU_RS07805 0.34 -0.5 1,736,559 + PFLU_RS07805 0.34 -0.6 1,736,559 + PFLU_RS07805 0.34 +0.9 1,736,560 - PFLU_RS07805 0.34 +1.6 1,736,560 - PFLU_RS07805 0.34 +0.1 1,736,560 - PFLU_RS07805 0.34 -1.6 1,736,560 - PFLU_RS07805 0.34 -1.2 1,736,560 - PFLU_RS07805 0.34 -1.6 1,736,560 - PFLU_RS07805 0.34 +0.6 1,736,560 - PFLU_RS07805 0.34 +0.6 1,736,560 - PFLU_RS07805 0.34 -0.2
Or see this region's nucleotide sequence