Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01215

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01205 and PFLU_RS01210 are separated by 3 nucleotidesPFLU_RS01210 and PFLU_RS01215 overlap by 1 nucleotidesPFLU_RS01215 and PFLU_RS01220 are separated by 279 nucleotides PFLU_RS01205: PFLU_RS01205 - L-cystine ABC transporter ATP-binding protein YecC, at 267,257 to 268,003 _RS01205 PFLU_RS01210: PFLU_RS01210 - cystine ABC transporter permease, at 268,007 to 268,672 _RS01210 PFLU_RS01215: PFLU_RS01215 - cystine ABC transporter substrate-binding protein, at 268,672 to 269,466 _RS01215 PFLU_RS01220: PFLU_RS01220 - D-cysteine desulfhydrase, at 269,746 to 270,741 _RS01220 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 267.957 kb on - strandat 268.086 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.107 kb on + strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.108 kb on - strand, within PFLU_RS01210at 268.214 kb on - strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.446 kb on + strand, within PFLU_RS01210at 268.447 kb on - strand, within PFLU_RS01210at 268.447 kb on - strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.449 kb on + strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.450 kb on - strand, within PFLU_RS01210at 268.466 kb on + strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.467 kb on - strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.500 kb on + strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.501 kb on - strand, within PFLU_RS01210at 268.598 kb on - strand, within PFLU_RS01210at 268.611 kb on + strandat 268.611 kb on + strandat 268.611 kb on + strandat 268.611 kb on + strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.614 kb on + strandat 268.673 kb on + strandat 268.697 kb on + strandat 268.698 kb on - strandat 268.797 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.943 kb on + strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.944 kb on - strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.991 kb on + strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 268.992 kb on - strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.099 kb on + strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.100 kb on - strand, within PFLU_RS01215at 269.117 kb on + strand, within PFLU_RS01215at 269.117 kb on + strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.118 kb on - strand, within PFLU_RS01215at 269.318 kb on + strand, within PFLU_RS01215at 269.319 kb on - strand, within PFLU_RS01215at 269.319 kb on - strand, within PFLU_RS01215at 269.452 kb on + strandat 269.452 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.460 kb on + strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.461 kb on - strandat 269.487 kb on - strandat 269.487 kb on - strandat 269.512 kb on + strandat 269.512 kb on + strandat 269.513 kb on - strandat 269.513 kb on - strandat 269.513 kb on - strandat 269.518 kb on + strandat 269.519 kb on - strandat 269.553 kb on - strandat 269.565 kb on + strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.638 kb on + strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.639 kb on - strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.682 kb on - strandat 269.689 kb on + strandat 269.689 kb on + strandat 269.689 kb on + strandat 269.689 kb on + strandat 269.689 kb on + strandat 269.689 kb on + strandat 269.690 kb on - strandat 269.690 kb on - strandat 269.690 kb on - strandat 269.690 kb on - strandat 269.732 kb on + strandat 269.744 kb on - strandat 269.765 kb on + strandat 269.765 kb on + strandat 269.766 kb on - strandat 269.766 kb on - strandat 269.806 kb on - strandat 269.873 kb on + strand, within PFLU_RS01220at 269.874 kb on - strand, within PFLU_RS01220at 269.874 kb on - strand, within PFLU_RS01220at 269.911 kb on + strand, within PFLU_RS01220at 269.911 kb on + strand, within PFLU_RS01220at 269.912 kb on - strand, within PFLU_RS01220at 269.912 kb on - strand, within PFLU_RS01220at 269.966 kb on + strand, within PFLU_RS01220at 269.966 kb on + strand, within PFLU_RS01220at 269.967 kb on - strand, within PFLU_RS01220at 270.236 kb on + strand, within PFLU_RS01220at 270.236 kb on + strand, within PFLU_RS01220at 270.236 kb on + strand, within PFLU_RS01220at 270.236 kb on + strand, within PFLU_RS01220at 270.237 kb on - strand, within PFLU_RS01220at 270.237 kb on - strand, within PFLU_RS01220at 270.237 kb on - strand, within PFLU_RS01220at 270.237 kb on - strand, within PFLU_RS01220at 270.364 kb on + strand, within PFLU_RS01220at 270.364 kb on + strand, within PFLU_RS01220at 270.364 kb on + strand, within PFLU_RS01220at 270.364 kb on + strand, within PFLU_RS01220at 270.365 kb on - strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.413 kb on + strand, within PFLU_RS01220at 270.414 kb on - strand, within PFLU_RS01220at 270.414 kb on - strand, within PFLU_RS01220at 270.414 kb on - strand, within PFLU_RS01220at 270.414 kb on - strand, within PFLU_RS01220at 270.417 kb on + strand, within PFLU_RS01220at 270.417 kb on + strand, within PFLU_RS01220at 270.417 kb on + strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220at 270.418 kb on - strand, within PFLU_RS01220

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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267,957 - +1.2
268,086 + PFLU_RS01210 0.12 -0.0
268,107 + PFLU_RS01210 0.15 +0.2
268,107 + PFLU_RS01210 0.15 -1.1
268,107 + PFLU_RS01210 0.15 +0.4
268,107 + PFLU_RS01210 0.15 -0.4
268,107 + PFLU_RS01210 0.15 +0.0
268,107 + PFLU_RS01210 0.15 -0.6
268,107 + PFLU_RS01210 0.15 +0.7
268,107 + PFLU_RS01210 0.15 +1.1
268,107 + PFLU_RS01210 0.15 +1.3
268,108 - PFLU_RS01210 0.15 +0.8
268,108 - PFLU_RS01210 0.15 -1.6
268,108 - PFLU_RS01210 0.15 +0.3
268,108 - PFLU_RS01210 0.15 -0.7
268,108 - PFLU_RS01210 0.15 +3.3
268,108 - PFLU_RS01210 0.15 +0.4
268,108 - PFLU_RS01210 0.15 +0.3
268,108 - PFLU_RS01210 0.15 +0.6
268,108 - PFLU_RS01210 0.15 +0.9
268,108 - PFLU_RS01210 0.15 +0.4
268,108 - PFLU_RS01210 0.15 +0.6
268,108 - PFLU_RS01210 0.15 +2.0
268,108 - PFLU_RS01210 0.15 -0.4
268,214 - PFLU_RS01210 0.31 -0.7
268,446 + PFLU_RS01210 0.66 +0.9
268,446 + PFLU_RS01210 0.66 -0.0
268,446 + PFLU_RS01210 0.66 +0.4
268,446 + PFLU_RS01210 0.66 -1.3
268,446 + PFLU_RS01210 0.66 -0.5
268,446 + PFLU_RS01210 0.66 +0.6
268,447 - PFLU_RS01210 0.66 -0.0
268,447 - PFLU_RS01210 0.66 -0.1
268,449 + PFLU_RS01210 0.66 +0.1
268,449 + PFLU_RS01210 0.66 -1.1
268,449 + PFLU_RS01210 0.66 +0.1
268,449 + PFLU_RS01210 0.66 +0.2
268,449 + PFLU_RS01210 0.66 -0.2
268,450 - PFLU_RS01210 0.67 -0.9
268,450 - PFLU_RS01210 0.67 -1.6
268,450 - PFLU_RS01210 0.67 -1.4
268,450 - PFLU_RS01210 0.67 -1.5
268,450 - PFLU_RS01210 0.67 +0.2
268,466 + PFLU_RS01210 0.69 -0.2
268,467 - PFLU_RS01210 0.69 +0.8
268,467 - PFLU_RS01210 0.69 +0.9
268,467 - PFLU_RS01210 0.69 +0.7
268,500 + PFLU_RS01210 0.74 +0.1
268,500 + PFLU_RS01210 0.74 -0.0
268,500 + PFLU_RS01210 0.74 -0.0
268,500 + PFLU_RS01210 0.74 -0.2
268,501 - PFLU_RS01210 0.74 +0.6
268,501 - PFLU_RS01210 0.74 +0.6
268,501 - PFLU_RS01210 0.74 +0.2
268,501 - PFLU_RS01210 0.74 -0.2
268,501 - PFLU_RS01210 0.74 +0.7
268,501 - PFLU_RS01210 0.74 -0.3
268,501 - PFLU_RS01210 0.74 -0.8
268,501 - PFLU_RS01210 0.74 +1.5
268,501 - PFLU_RS01210 0.74 +0.4
268,598 - PFLU_RS01210 0.89 +0.4
268,611 + +0.1
268,611 + +0.0
268,611 + -0.0
268,611 + +0.1
268,612 - +0.8
268,612 - +0.4
268,612 - -2.0
268,612 - -0.6
268,614 + +0.9
268,673 + +1.1
268,697 + -2.5
268,698 - +0.2
268,797 + PFLU_RS01215 0.16 +0.5
268,943 + PFLU_RS01215 0.34 +0.0
268,943 + PFLU_RS01215 0.34 +0.6
268,943 + PFLU_RS01215 0.34 +1.6
268,943 + PFLU_RS01215 0.34 +1.4
268,943 + PFLU_RS01215 0.34 +0.2
268,943 + PFLU_RS01215 0.34 -0.5
268,943 + PFLU_RS01215 0.34 +0.3
268,944 - PFLU_RS01215 0.34 -0.8
268,944 - PFLU_RS01215 0.34 -0.2
268,944 - PFLU_RS01215 0.34 -1.4
268,944 - PFLU_RS01215 0.34 +1.2
268,944 - PFLU_RS01215 0.34 -1.1
268,944 - PFLU_RS01215 0.34 -0.7
268,944 - PFLU_RS01215 0.34 +0.2
268,944 - PFLU_RS01215 0.34 +0.1
268,944 - PFLU_RS01215 0.34 +0.0
268,944 - PFLU_RS01215 0.34 -0.0
268,991 + PFLU_RS01215 0.40 +0.2
268,991 + PFLU_RS01215 0.40 -0.2
268,991 + PFLU_RS01215 0.40 +0.5
268,992 - PFLU_RS01215 0.40 -0.0
268,992 - PFLU_RS01215 0.40 +2.3
268,992 - PFLU_RS01215 0.40 +0.6
269,099 + PFLU_RS01215 0.54 +0.3
269,099 + PFLU_RS01215 0.54 -2.0
269,099 + PFLU_RS01215 0.54 +1.0
269,099 + PFLU_RS01215 0.54 +1.1
269,099 + PFLU_RS01215 0.54 +0.9
269,100 - PFLU_RS01215 0.54 +0.5
269,100 - PFLU_RS01215 0.54 -0.9
269,100 - PFLU_RS01215 0.54 +1.5
269,100 - PFLU_RS01215 0.54 +0.7
269,100 - PFLU_RS01215 0.54 +0.2
269,100 - PFLU_RS01215 0.54 -0.6
269,100 - PFLU_RS01215 0.54 -2.6
269,100 - PFLU_RS01215 0.54 -0.0
269,100 - PFLU_RS01215 0.54 -0.3
269,100 - PFLU_RS01215 0.54 -0.3
269,100 - PFLU_RS01215 0.54 -0.5
269,117 + PFLU_RS01215 0.56 +0.6
269,117 + PFLU_RS01215 0.56 +0.4
269,118 - PFLU_RS01215 0.56 -0.5
269,118 - PFLU_RS01215 0.56 -0.9
269,118 - PFLU_RS01215 0.56 -1.0
269,318 + PFLU_RS01215 0.81 +0.7
269,319 - PFLU_RS01215 0.81 +0.6
269,319 - PFLU_RS01215 0.81 -0.1
269,452 + -0.0
269,452 + -1.0
269,460 + -0.9
269,460 + -1.3
269,460 + -0.2
269,460 + -0.6
269,460 + -0.8
269,460 + +3.6
269,461 - +0.7
269,461 - -0.3
269,461 - -1.1
269,461 - -1.0
269,461 - -0.6
269,461 - +0.4
269,461 - -0.9
269,461 - -0.6
269,461 - +0.0
269,461 - +0.2
269,461 - +0.7
269,487 - +0.4
269,487 - -2.1
269,512 + -0.9
269,512 + -0.1
269,513 - +1.3
269,513 - +0.2
269,513 - +0.1
269,518 + -0.8
269,519 - +0.5
269,553 - -1.1
269,565 + -0.0
269,566 - -0.5
269,566 - -1.2
269,638 + -0.0
269,638 + +1.0
269,638 + +0.3
269,638 + -0.4
269,638 + -0.6
269,638 + +0.6
269,638 + -1.1
269,638 + -1.8
269,639 - -0.0
269,639 - +1.8
269,639 - +0.6
269,639 - +0.8
269,639 - +0.8
269,639 - +0.8
269,639 - +0.6
269,639 - +1.0
269,639 - -0.4
269,639 - -1.2
269,639 - +0.1
269,639 - +0.2
269,681 + -0.4
269,681 + -1.1
269,681 + +0.5
269,681 + +1.0
269,681 + -1.8
269,681 + +0.6
269,681 + +0.7
269,681 + +0.4
269,681 + -0.3
269,681 + +0.1
269,681 + -0.4
269,681 + +0.7
269,681 + +0.8
269,681 + +0.2
269,681 + -0.1
269,681 + +0.3
269,681 + -1.3
269,682 - +0.2
269,682 - +1.1
269,682 - -0.4
269,682 - -0.3
269,682 - +0.7
269,682 - +0.5
269,682 - +0.6
269,682 - +0.9
269,682 - -0.4
269,682 - +0.8
269,682 - +0.4
269,689 + +1.3
269,689 + +1.4
269,689 + +0.0
269,689 + -0.9
269,689 + +0.2
269,689 + -0.3
269,690 - +1.1
269,690 - +0.4
269,690 - +0.2
269,690 - +0.3
269,732 + +0.4
269,744 - -0.6
269,765 + +0.0
269,765 + -1.0
269,766 - -0.7
269,766 - +1.2
269,806 - +1.3
269,873 + PFLU_RS01220 0.13 +0.3
269,874 - PFLU_RS01220 0.13 -1.3
269,874 - PFLU_RS01220 0.13 -0.0
269,911 + PFLU_RS01220 0.17 +0.4
269,911 + PFLU_RS01220 0.17 +0.9
269,912 - PFLU_RS01220 0.17 +1.1
269,912 - PFLU_RS01220 0.17 +0.0
269,966 + PFLU_RS01220 0.22 -0.4
269,966 + PFLU_RS01220 0.22 -0.4
269,967 - PFLU_RS01220 0.22 -3.1
270,236 + PFLU_RS01220 0.49 +0.4
270,236 + PFLU_RS01220 0.49 -1.3
270,236 + PFLU_RS01220 0.49 -1.5
270,236 + PFLU_RS01220 0.49 +0.2
270,237 - PFLU_RS01220 0.49 -0.4
270,237 - PFLU_RS01220 0.49 +0.3
270,237 - PFLU_RS01220 0.49 -0.8
270,237 - PFLU_RS01220 0.49 -1.7
270,364 + PFLU_RS01220 0.62 +1.6
270,364 + PFLU_RS01220 0.62 -0.4
270,364 + PFLU_RS01220 0.62 -1.7
270,364 + PFLU_RS01220 0.62 +0.9
270,365 - PFLU_RS01220 0.62 +0.2
270,413 + PFLU_RS01220 0.67 -1.1
270,413 + PFLU_RS01220 0.67 +0.8
270,413 + PFLU_RS01220 0.67 -0.7
270,413 + PFLU_RS01220 0.67 -0.5
270,413 + PFLU_RS01220 0.67 -0.7
270,413 + PFLU_RS01220 0.67 +0.0
270,414 - PFLU_RS01220 0.67 -1.7
270,414 - PFLU_RS01220 0.67 -0.1
270,414 - PFLU_RS01220 0.67 +0.0
270,414 - PFLU_RS01220 0.67 +0.4
270,417 + PFLU_RS01220 0.67 -0.6
270,417 + PFLU_RS01220 0.67 +1.4
270,417 + PFLU_RS01220 0.67 -1.1
270,418 - PFLU_RS01220 0.67 -1.4
270,418 - PFLU_RS01220 0.67 +0.2
270,418 - PFLU_RS01220 0.67 -0.4
270,418 - PFLU_RS01220 0.67 -0.5
270,418 - PFLU_RS01220 0.67 -0.8
270,418 - PFLU_RS01220 0.67 -0.7
270,418 - PFLU_RS01220 0.67 -1.2

Or see this region's nucleotide sequence