Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00385

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00380 and PFLU_RS00385 are separated by 124 nucleotidesPFLU_RS00385 and PFLU_RS00390 are separated by 56 nucleotidesPFLU_RS00390 and PFLU_RS00395 are separated by 74 nucleotides PFLU_RS00380: PFLU_RS00380 - zinc ABC transporter substrate-binding protein ZnuA, at 75,735 to 76,664 _RS00380 PFLU_RS00385: PFLU_RS00385 - homoserine kinase, at 76,789 to 77,742 _RS00385 PFLU_RS00390: PFLU_RS00390 - DUF2782 domain-containing protein, at 77,799 to 78,089 _RS00390 PFLU_RS00395: PFLU_RS00395 - DNA polymerase I, at 78,164 to 80,941 _RS00395 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.794 kb on + strandat 75.877 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.920 kb on + strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.921 kb on - strand, within PFLU_RS00380at 75.924 kb on + strand, within PFLU_RS00380at 75.924 kb on + strand, within PFLU_RS00380at 75.924 kb on + strand, within PFLU_RS00380at 75.924 kb on + strand, within PFLU_RS00380at 75.924 kb on + strand, within PFLU_RS00380at 75.925 kb on - strand, within PFLU_RS00380at 75.925 kb on - strand, within PFLU_RS00380at 75.925 kb on - strand, within PFLU_RS00380at 75.925 kb on - strand, within PFLU_RS00380at 75.925 kb on - strand, within PFLU_RS00380at 75.947 kb on - strand, within PFLU_RS00380at 75.975 kb on + strand, within PFLU_RS00380at 75.975 kb on + strand, within PFLU_RS00380at 75.975 kb on + strand, within PFLU_RS00380at 75.976 kb on - strand, within PFLU_RS00380at 75.976 kb on - strand, within PFLU_RS00380at 76.006 kb on + strand, within PFLU_RS00380at 76.028 kb on + strand, within PFLU_RS00380at 76.092 kb on - strand, within PFLU_RS00380at 76.092 kb on - strand, within PFLU_RS00380at 76.092 kb on - strand, within PFLU_RS00380at 76.177 kb on + strand, within PFLU_RS00380at 76.177 kb on + strand, within PFLU_RS00380at 76.177 kb on + strand, within PFLU_RS00380at 76.178 kb on - strand, within PFLU_RS00380at 76.178 kb on - strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.338 kb on + strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.339 kb on - strand, within PFLU_RS00380at 76.366 kb on - strand, within PFLU_RS00380at 76.366 kb on - strand, within PFLU_RS00380at 76.366 kb on - strand, within PFLU_RS00380at 76.380 kb on + strand, within PFLU_RS00380at 76.423 kb on + strand, within PFLU_RS00380at 76.423 kb on + strand, within PFLU_RS00380at 76.424 kb on - strand, within PFLU_RS00380at 76.424 kb on - strand, within PFLU_RS00380at 76.424 kb on - strand, within PFLU_RS00380at 76.424 kb on - strand, within PFLU_RS00380at 76.424 kb on - strand, within PFLU_RS00380at 76.458 kb on - strand, within PFLU_RS00380at 76.458 kb on - strand, within PFLU_RS00380at 76.458 kb on - strand, within PFLU_RS00380at 76.581 kb on + strandat 76.582 kb on - strandat 76.583 kb on + strandat 76.584 kb on - strandat 76.584 kb on - strandat 76.605 kb on + strandat 76.606 kb on - strandat 76.662 kb on + strandat 76.662 kb on + strandat 76.662 kb on + strandat 76.662 kb on + strandat 76.662 kb on + strandat 76.663 kb on - strandat 76.663 kb on - strandat 76.663 kb on - strandat 76.663 kb on - strandat 76.663 kb on - strandat 76.680 kb on + strandat 76.680 kb on + strandat 76.680 kb on + strandat 76.681 kb on - strandat 76.681 kb on - strandat 76.804 kb on + strandat 76.804 kb on + strandat 76.804 kb on + strandat 76.805 kb on - strandat 76.805 kb on - strandat 77.082 kb on - strand, within PFLU_RS00385at 77.082 kb on - strand, within PFLU_RS00385at 77.108 kb on + strand, within PFLU_RS00385at 77.108 kb on + strand, within PFLU_RS00385at 77.108 kb on + strand, within PFLU_RS00385at 77.109 kb on - strand, within PFLU_RS00385at 77.109 kb on - strand, within PFLU_RS00385at 77.109 kb on - strand, within PFLU_RS00385at 77.109 kb on - strand, within PFLU_RS00385at 77.109 kb on - strand, within PFLU_RS00385at 77.325 kb on + strand, within PFLU_RS00385at 77.325 kb on + strand, within PFLU_RS00385at 77.326 kb on - strand, within PFLU_RS00385at 77.335 kb on + strand, within PFLU_RS00385at 77.335 kb on + strand, within PFLU_RS00385at 77.336 kb on - strand, within PFLU_RS00385at 77.336 kb on - strand, within PFLU_RS00385at 77.336 kb on - strand, within PFLU_RS00385at 77.792 kb on + strandat 77.792 kb on + strandat 77.792 kb on + strandat 77.793 kb on - strandat 77.887 kb on - strand, within PFLU_RS00390at 77.896 kb on + strand, within PFLU_RS00390at 77.896 kb on + strand, within PFLU_RS00390at 77.897 kb on - strand, within PFLU_RS00390at 77.897 kb on - strand, within PFLU_RS00390at 77.933 kb on - strand, within PFLU_RS00390at 77.933 kb on - strand, within PFLU_RS00390at 77.953 kb on + strand, within PFLU_RS00390at 77.954 kb on - strand, within PFLU_RS00390at 77.990 kb on + strand, within PFLU_RS00390at 77.990 kb on + strand, within PFLU_RS00390at 77.991 kb on - strand, within PFLU_RS00390at 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.083 kb on + strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.084 kb on - strandat 78.092 kb on + strandat 78.129 kb on + strandat 78.129 kb on + strandat 78.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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75,794 + -0.4
75,877 + PFLU_RS00380 0.15 +0.2
75,920 + PFLU_RS00380 0.20 +1.1
75,920 + PFLU_RS00380 0.20 +1.2
75,920 + PFLU_RS00380 0.20 +0.5
75,920 + PFLU_RS00380 0.20 +0.5
75,920 + PFLU_RS00380 0.20 -0.5
75,920 + PFLU_RS00380 0.20 +1.4
75,920 + PFLU_RS00380 0.20 +0.4
75,920 + PFLU_RS00380 0.20 +0.6
75,921 - PFLU_RS00380 0.20 +0.5
75,921 - PFLU_RS00380 0.20 -0.3
75,921 - PFLU_RS00380 0.20 -1.0
75,921 - PFLU_RS00380 0.20 +0.8
75,921 - PFLU_RS00380 0.20 -1.2
75,921 - PFLU_RS00380 0.20 +0.9
75,921 - PFLU_RS00380 0.20 -0.5
75,921 - PFLU_RS00380 0.20 -1.3
75,921 - PFLU_RS00380 0.20 -0.9
75,924 + PFLU_RS00380 0.20 -0.2
75,924 + PFLU_RS00380 0.20 +0.5
75,924 + PFLU_RS00380 0.20 +0.6
75,924 + PFLU_RS00380 0.20 +1.3
75,924 + PFLU_RS00380 0.20 +0.9
75,925 - PFLU_RS00380 0.20 +1.2
75,925 - PFLU_RS00380 0.20 +0.9
75,925 - PFLU_RS00380 0.20 -0.1
75,925 - PFLU_RS00380 0.20 +1.1
75,925 - PFLU_RS00380 0.20 +0.8
75,947 - PFLU_RS00380 0.23 -1.2
75,975 + PFLU_RS00380 0.26 -1.0
75,975 + PFLU_RS00380 0.26 -2.4
75,975 + PFLU_RS00380 0.26 -0.3
75,976 - PFLU_RS00380 0.26 +0.7
75,976 - PFLU_RS00380 0.26 +0.5
76,006 + PFLU_RS00380 0.29 -0.8
76,028 + PFLU_RS00380 0.32 +0.7
76,092 - PFLU_RS00380 0.38 +0.4
76,092 - PFLU_RS00380 0.38 +0.9
76,092 - PFLU_RS00380 0.38 +0.0
76,177 + PFLU_RS00380 0.48 +0.3
76,177 + PFLU_RS00380 0.48 -2.3
76,177 + PFLU_RS00380 0.48 +0.1
76,178 - PFLU_RS00380 0.48 +0.4
76,178 - PFLU_RS00380 0.48 -1.8
76,338 + PFLU_RS00380 0.65 -0.3
76,338 + PFLU_RS00380 0.65 +0.2
76,338 + PFLU_RS00380 0.65 +0.5
76,338 + PFLU_RS00380 0.65 +0.9
76,338 + PFLU_RS00380 0.65 -1.8
76,338 + PFLU_RS00380 0.65 -1.0
76,339 - PFLU_RS00380 0.65 -0.7
76,339 - PFLU_RS00380 0.65 +0.1
76,339 - PFLU_RS00380 0.65 -0.5
76,339 - PFLU_RS00380 0.65 -0.3
76,339 - PFLU_RS00380 0.65 +0.8
76,339 - PFLU_RS00380 0.65 +0.1
76,339 - PFLU_RS00380 0.65 +0.1
76,339 - PFLU_RS00380 0.65 -0.9
76,366 - PFLU_RS00380 0.68 +1.2
76,366 - PFLU_RS00380 0.68 -0.8
76,366 - PFLU_RS00380 0.68 -0.8
76,380 + PFLU_RS00380 0.69 -1.5
76,423 + PFLU_RS00380 0.74 -0.3
76,423 + PFLU_RS00380 0.74 +0.5
76,424 - PFLU_RS00380 0.74 +0.3
76,424 - PFLU_RS00380 0.74 +0.2
76,424 - PFLU_RS00380 0.74 -0.7
76,424 - PFLU_RS00380 0.74 +0.8
76,424 - PFLU_RS00380 0.74 -0.4
76,458 - PFLU_RS00380 0.78 -1.7
76,458 - PFLU_RS00380 0.78 +0.4
76,458 - PFLU_RS00380 0.78 -1.9
76,581 + +0.7
76,582 - +0.1
76,583 + -1.7
76,584 - +0.9
76,584 - +0.7
76,605 + +0.0
76,606 - -0.3
76,662 + +1.1
76,662 + -0.4
76,662 + -2.9
76,662 + -0.4
76,662 + -0.2
76,663 - -0.2
76,663 - -0.0
76,663 - -0.0
76,663 - +0.4
76,663 - +0.3
76,680 + +1.1
76,680 + -0.1
76,680 + -1.5
76,681 - -1.0
76,681 - -1.1
76,804 + +0.7
76,804 + -0.6
76,804 + -0.8
76,805 - +1.1
76,805 - -0.3
77,082 - PFLU_RS00385 0.31 +3.2
77,082 - PFLU_RS00385 0.31 +1.2
77,108 + PFLU_RS00385 0.33 -0.1
77,108 + PFLU_RS00385 0.33 -0.6
77,108 + PFLU_RS00385 0.33 +0.6
77,109 - PFLU_RS00385 0.34 +1.2
77,109 - PFLU_RS00385 0.34 +3.2
77,109 - PFLU_RS00385 0.34 +0.2
77,109 - PFLU_RS00385 0.34 +1.2
77,109 - PFLU_RS00385 0.34 +0.9
77,325 + PFLU_RS00385 0.56 +2.2
77,325 + PFLU_RS00385 0.56 +2.2
77,326 - PFLU_RS00385 0.56 +0.5
77,335 + PFLU_RS00385 0.57 +1.6
77,335 + PFLU_RS00385 0.57 +2.2
77,336 - PFLU_RS00385 0.57 +1.2
77,336 - PFLU_RS00385 0.57 +1.2
77,336 - PFLU_RS00385 0.57 -0.6
77,792 + +0.3
77,792 + +0.6
77,792 + +0.7
77,793 - +0.2
77,887 - PFLU_RS00390 0.30 -1.5
77,896 + PFLU_RS00390 0.33 -2.2
77,896 + PFLU_RS00390 0.33 +0.6
77,897 - PFLU_RS00390 0.34 +0.8
77,897 - PFLU_RS00390 0.34 -1.4
77,933 - PFLU_RS00390 0.46 +1.1
77,933 - PFLU_RS00390 0.46 +1.4
77,953 + PFLU_RS00390 0.53 -1.5
77,954 - PFLU_RS00390 0.53 -2.0
77,990 + PFLU_RS00390 0.66 +0.2
77,990 + PFLU_RS00390 0.66 +1.3
77,991 - PFLU_RS00390 0.66 +0.5
78,083 + +0.4
78,083 + +0.1
78,083 + +0.1
78,083 + +0.5
78,083 + +0.7
78,083 + +1.6
78,083 + +0.4
78,083 + +0.5
78,083 + +0.8
78,083 + -0.1
78,083 + +0.1
78,083 + +0.3
78,083 + +0.5
78,083 + +0.9
78,084 - -1.4
78,084 - +0.5
78,084 - -0.0
78,084 - +0.1
78,084 - +0.0
78,084 - +0.4
78,084 - +0.7
78,084 - +1.8
78,084 - +1.1
78,084 - -0.1
78,084 - +1.0
78,084 - +0.0
78,084 - +1.7
78,084 - +0.1
78,084 - -2.9
78,084 - +0.2
78,084 - +0.1
78,084 - -0.1
78,084 - +0.0
78,092 + -0.8
78,129 + -0.1
78,129 + +0.2
78,129 + +0.2

Or see this region's nucleotide sequence