Strain Fitness in Pseudomonas sp. S08-1 around OH686_22840

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22830 and OH686_22835 are separated by 185 nucleotidesOH686_22835 and OH686_22840 are separated by 224 nucleotidesOH686_22840 and OH686_22845 are separated by 17 nucleotidesOH686_22845 and OH686_22850 are separated by 60 nucleotidesOH686_22850 and OH686_22855 are separated by 30 nucleotides OH686_22830: OH686_22830 - Gamma-glutamyl-putrescine oxidase , at 4,630,892 to 4,632,175 _22830 OH686_22835: OH686_22835 - tRNA-Val, at 4,632,361 to 4,632,437 _22835 OH686_22840: OH686_22840 - threonine--tRNA ligase, at 4,632,662 to 4,634,584 _22840 OH686_22845: OH686_22845 - translation initiation factor IF-3, at 4,634,602 to 4,635,135 _22845 OH686_22850: OH686_22850 - ribosomal protein L35, at 4,635,196 to 4,635,390 _22850 OH686_22855: OH686_22855 - ribosomal protein L20, at 4,635,421 to 4,635,777 _22855 Position (kb) 4632 4633 4634 4635Strain fitness (log2 ratio) -2 -1 0 1 2at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.840 kb on - strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.966 kb on - strand, within OH686_22830at 4632.060 kb on + strandat 4632.060 kb on + strandat 4632.060 kb on + strandat 4632.061 kb on - strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.175 kb on + strandat 4632.176 kb on - strandat 4632.176 kb on - strandat 4632.185 kb on + strandat 4632.186 kb on - strandat 4632.186 kb on - strandat 4632.305 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.472 kb on + strandat 4632.473 kb on - strandat 4632.473 kb on - strandat 4632.473 kb on - strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4635.129 kb on + strandat 4635.129 kb on + strandat 4635.129 kb on + strandat 4635.129 kb on + strandat 4635.129 kb on + strandat 4635.402 kb on + strandat 4635.402 kb on + strandat 4635.402 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,631,664 + OH686_22830 0.60 +0.4
4,631,664 + OH686_22830 0.60 +1.2
4,631,664 + OH686_22830 0.60 -1.0
4,631,664 + OH686_22830 0.60 -0.5
4,631,664 + OH686_22830 0.60 -0.2
4,631,664 + OH686_22830 0.60 +0.9
4,631,664 + OH686_22830 0.60 +0.6
4,631,664 + OH686_22830 0.60 -0.4
4,631,664 + OH686_22830 0.60 +0.0
4,631,664 + OH686_22830 0.60 +0.7
4,631,664 + OH686_22830 0.60 -0.0
4,631,664 + OH686_22830 0.60 -0.8
4,631,664 + OH686_22830 0.60 -0.9
4,631,665 - OH686_22830 0.60 +0.6
4,631,665 - OH686_22830 0.60 -0.3
4,631,665 - OH686_22830 0.60 -0.1
4,631,665 - OH686_22830 0.60 -0.7
4,631,665 - OH686_22830 0.60 +0.3
4,631,665 - OH686_22830 0.60 -0.6
4,631,665 - OH686_22830 0.60 +0.3
4,631,665 - OH686_22830 0.60 +0.8
4,631,665 - OH686_22830 0.60 -0.3
4,631,665 - OH686_22830 0.60 -0.7
4,631,665 - OH686_22830 0.60 -1.5
4,631,665 - OH686_22830 0.60 -0.2
4,631,665 - OH686_22830 0.60 -0.3
4,631,665 - OH686_22830 0.60 +0.2
4,631,665 - OH686_22830 0.60 +0.2
4,631,665 - OH686_22830 0.60 -0.0
4,631,665 - OH686_22830 0.60 -0.3
4,631,829 + OH686_22830 0.73 +0.1
4,631,829 + OH686_22830 0.73 +0.5
4,631,829 + OH686_22830 0.73 -0.7
4,631,829 + OH686_22830 0.73 +0.6
4,631,829 + OH686_22830 0.73 +0.7
4,631,829 + OH686_22830 0.73 +0.2
4,631,830 - OH686_22830 0.73 -0.4
4,631,830 - OH686_22830 0.73 +0.5
4,631,830 - OH686_22830 0.73 -0.1
4,631,830 - OH686_22830 0.73 +0.8
4,631,830 - OH686_22830 0.73 -1.7
4,631,830 - OH686_22830 0.73 -1.4
4,631,830 - OH686_22830 0.73 -0.0
4,631,840 - OH686_22830 0.74 +0.4
4,631,938 + OH686_22830 0.81 +0.8
4,631,938 + OH686_22830 0.81 -1.5
4,631,938 + OH686_22830 0.81 +0.7
4,631,938 + OH686_22830 0.81 +0.7
4,631,938 + OH686_22830 0.81 +0.8
4,631,940 + OH686_22830 0.82 -0.5
4,631,940 + OH686_22830 0.82 +0.7
4,631,940 + OH686_22830 0.82 -0.1
4,631,940 + OH686_22830 0.82 +0.6
4,631,940 + OH686_22830 0.82 -0.6
4,631,940 + OH686_22830 0.82 +0.5
4,631,940 + OH686_22830 0.82 +0.4
4,631,940 + OH686_22830 0.82 -1.1
4,631,940 + OH686_22830 0.82 -0.2
4,631,940 + OH686_22830 0.82 +0.5
4,631,940 + OH686_22830 0.82 -1.1
4,631,940 + OH686_22830 0.82 -0.1
4,631,940 + OH686_22830 0.82 +0.9
4,631,940 + OH686_22830 0.82 +0.3
4,631,941 - OH686_22830 0.82 -1.2
4,631,941 - OH686_22830 0.82 -1.1
4,631,941 - OH686_22830 0.82 +0.4
4,631,941 - OH686_22830 0.82 +0.2
4,631,941 - OH686_22830 0.82 -0.6
4,631,941 - OH686_22830 0.82 -0.7
4,631,941 - OH686_22830 0.82 -0.2
4,631,941 - OH686_22830 0.82 +0.2
4,631,941 - OH686_22830 0.82 -0.4
4,631,941 - OH686_22830 0.82 -0.7
4,631,941 - OH686_22830 0.82 -0.4
4,631,941 - OH686_22830 0.82 +1.4
4,631,941 - OH686_22830 0.82 +0.2
4,631,941 - OH686_22830 0.82 -0.4
4,631,941 - OH686_22830 0.82 +0.9
4,631,941 - OH686_22830 0.82 -0.2
4,631,966 - OH686_22830 0.84 -0.3
4,632,060 + -0.5
4,632,060 + -1.3
4,632,060 + -0.8
4,632,061 - -0.1
4,632,144 + +0.6
4,632,144 + -1.6
4,632,144 + +0.2
4,632,144 + +0.4
4,632,145 - -0.4
4,632,145 - +2.0
4,632,145 - -0.1
4,632,145 - -0.0
4,632,145 - +0.3
4,632,147 + +0.2
4,632,147 + +0.3
4,632,147 + -0.4
4,632,147 + -1.4
4,632,147 + -0.4
4,632,147 + -0.1
4,632,148 - +0.1
4,632,148 - -1.5
4,632,148 - +0.4
4,632,148 - -0.4
4,632,148 - -0.1
4,632,175 + +0.5
4,632,176 - -0.1
4,632,176 - -1.0
4,632,185 + -0.0
4,632,186 - +0.3
4,632,186 - -0.3
4,632,305 + +0.0
4,632,454 + -0.1
4,632,454 + -0.2
4,632,454 + +0.1
4,632,454 + +0.1
4,632,454 + +1.6
4,632,455 - +0.1
4,632,455 - -1.3
4,632,455 - -0.7
4,632,455 - -0.1
4,632,455 - -0.0
4,632,458 + -0.6
4,632,458 + -0.5
4,632,458 + -1.8
4,632,458 + -1.6
4,632,458 + -0.8
4,632,458 + +0.9
4,632,458 + -0.6
4,632,458 + -0.1
4,632,458 + -0.3
4,632,458 + -0.9
4,632,458 + +2.0
4,632,458 + -0.5
4,632,458 + -0.8
4,632,458 + +0.1
4,632,458 + -0.4
4,632,458 + -0.3
4,632,458 + -0.4
4,632,458 + -0.0
4,632,458 + -1.1
4,632,458 + +1.3
4,632,458 + -0.3
4,632,459 - -1.4
4,632,459 - -1.0
4,632,459 - +0.2
4,632,459 - +0.2
4,632,459 - +0.7
4,632,459 - +0.1
4,632,459 - -0.7
4,632,459 - +0.1
4,632,459 - -0.1
4,632,459 - +0.3
4,632,459 - +0.0
4,632,459 - +0.5
4,632,459 - +1.0
4,632,472 + +0.2
4,632,473 - +0.4
4,632,473 - -0.9
4,632,473 - -0.7
4,632,523 + -0.2
4,632,523 + -0.7
4,632,523 + +0.6
4,632,523 + -0.4
4,632,523 + +0.0
4,635,129 + -0.0
4,635,129 + -0.6
4,635,129 + +0.3
4,635,129 + +2.2
4,635,129 + +0.4
4,635,402 + -0.1
4,635,402 + -2.4
4,635,402 + +1.0

Or see this region's nucleotide sequence