Strain Fitness in Pseudomonas sp. S08-1 around OH686_20800

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20790 and OH686_20795 are separated by 26 nucleotidesOH686_20795 and OH686_20800 are separated by 13 nucleotidesOH686_20800 and OH686_20805 overlap by 4 nucleotidesOH686_20805 and OH686_20810 are separated by 0 nucleotides OH686_20790: OH686_20790 - intracellular septation protein A, at 4,251,240 to 4,251,869 _20790 OH686_20795: OH686_20795 - Predicted metal-dependent (PHP family), at 4,251,896 to 4,252,756 _20795 OH686_20800: OH686_20800 - tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family, at 4,252,770 to 4,253,402 _20800 OH686_20805: OH686_20805 - Segregation and condensation protein A, at 4,253,399 to 4,254,211 _20805 OH686_20810: OH686_20810 - segregation and condensation protein B, at 4,254,212 to 4,255,003 _20810 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -2 -1 0 1 2at 4251.861 kb on + strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.864 kb on + strandat 4251.864 kb on + strandat 4251.864 kb on + strandat 4251.865 kb on - strandat 4251.865 kb on - strandat 4251.865 kb on - strandat 4252.487 kb on + strand, within OH686_20795at 4252.488 kb on - strand, within OH686_20795at 4252.501 kb on + strand, within OH686_20795at 4252.501 kb on + strand, within OH686_20795at 4252.502 kb on - strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.560 kb on + strand, within OH686_20795at 4252.561 kb on - strand, within OH686_20795at 4252.561 kb on - strand, within OH686_20795at 4252.561 kb on - strand, within OH686_20795at 4252.561 kb on - strand, within OH686_20795at 4252.685 kb on + strandat 4252.685 kb on + strandat 4252.685 kb on + strandat 4252.685 kb on + strandat 4252.685 kb on + strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.686 kb on - strandat 4252.716 kb on + strandat 4252.716 kb on + strandat 4252.717 kb on - strandat 4252.744 kb on + strandat 4252.744 kb on + strandat 4252.744 kb on + strandat 4252.744 kb on + strandat 4252.748 kb on - strandat 4252.844 kb on + strand, within OH686_20800at 4252.881 kb on + strand, within OH686_20800at 4252.882 kb on - strand, within OH686_20800at 4252.882 kb on - strand, within OH686_20800at 4252.882 kb on - strand, within OH686_20800at 4252.972 kb on + strand, within OH686_20800at 4252.973 kb on - strand, within OH686_20800at 4252.973 kb on - strand, within OH686_20800at 4252.973 kb on - strand, within OH686_20800at 4252.973 kb on - strand, within OH686_20800at 4253.058 kb on + strand, within OH686_20800at 4253.059 kb on - strand, within OH686_20800at 4253.059 kb on - strand, within OH686_20800at 4253.059 kb on - strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.060 kb on + strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.061 kb on - strand, within OH686_20800at 4253.442 kb on + strandat 4253.442 kb on + strandat 4253.442 kb on + strandat 4253.442 kb on + strandat 4253.443 kb on - strandat 4253.443 kb on - strandat 4253.459 kb on + strandat 4253.459 kb on + strandat 4253.459 kb on + strandat 4253.459 kb on + strandat 4253.460 kb on - strandat 4253.460 kb on - strandat 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.495 kb on + strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.496 kb on - strand, within OH686_20805at 4253.561 kb on + strand, within OH686_20805at 4253.562 kb on - strand, within OH686_20805at 4253.562 kb on - strand, within OH686_20805at 4253.562 kb on - strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.624 kb on + strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.625 kb on - strand, within OH686_20805at 4253.633 kb on + strand, within OH686_20805at 4253.633 kb on + strand, within OH686_20805at 4253.633 kb on + strand, within OH686_20805at 4253.633 kb on + strand, within OH686_20805at 4253.633 kb on + strand, within OH686_20805at 4253.634 kb on - strand, within OH686_20805at 4253.634 kb on - strand, within OH686_20805at 4253.634 kb on - strand, within OH686_20805at 4253.634 kb on - strand, within OH686_20805at 4253.634 kb on - strand, within OH686_20805at 4253.798 kb on + strand, within OH686_20805at 4253.798 kb on + strand, within OH686_20805at 4253.799 kb on - strand, within OH686_20805at 4253.799 kb on - strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.807 kb on + strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.808 kb on - strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.809 kb on + strand, within OH686_20805at 4253.810 kb on - strand, within OH686_20805at 4254.184 kb on + strandat 4254.209 kb on + strandat 4254.209 kb on + strandat 4254.209 kb on + strandat 4254.209 kb on + strandat 4254.209 kb on + strandat 4254.209 kb on + strandat 4254.210 kb on - strandat 4254.210 kb on - strandat 4254.210 kb on - strandat 4254.210 kb on - strandat 4254.210 kb on - strandat 4254.210 kb on - strandat 4254.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,251,861 + -0.1
4,251,862 - +0.4
4,251,862 - +1.5
4,251,862 - +0.6
4,251,862 - +1.4
4,251,862 - +0.4
4,251,862 - +0.2
4,251,862 - +0.2
4,251,862 - -0.6
4,251,864 + +0.1
4,251,864 + -0.6
4,251,864 + -1.3
4,251,865 - +0.3
4,251,865 - -0.2
4,251,865 - +0.6
4,252,487 + OH686_20795 0.69 -0.6
4,252,488 - OH686_20795 0.69 +2.1
4,252,501 + OH686_20795 0.70 +0.4
4,252,501 + OH686_20795 0.70 +1.6
4,252,502 - OH686_20795 0.70 -1.0
4,252,560 + OH686_20795 0.77 +0.1
4,252,560 + OH686_20795 0.77 +0.9
4,252,560 + OH686_20795 0.77 -1.3
4,252,560 + OH686_20795 0.77 -0.5
4,252,560 + OH686_20795 0.77 +0.2
4,252,560 + OH686_20795 0.77 +0.0
4,252,561 - OH686_20795 0.77 +0.4
4,252,561 - OH686_20795 0.77 -0.1
4,252,561 - OH686_20795 0.77 -1.5
4,252,561 - OH686_20795 0.77 -0.4
4,252,685 + +0.6
4,252,685 + -0.5
4,252,685 + +0.1
4,252,685 + -0.1
4,252,685 + +0.2
4,252,686 - -0.1
4,252,686 - +0.4
4,252,686 - -2.4
4,252,686 - +0.3
4,252,686 - -0.5
4,252,686 - +0.6
4,252,686 - -0.3
4,252,716 + +0.9
4,252,716 + +1.5
4,252,717 - -0.5
4,252,744 + -0.1
4,252,744 + -0.9
4,252,744 + +0.5
4,252,744 + +0.9
4,252,748 - -0.0
4,252,844 + OH686_20800 0.12 -0.1
4,252,881 + OH686_20800 0.18 -0.5
4,252,882 - OH686_20800 0.18 -1.7
4,252,882 - OH686_20800 0.18 +0.6
4,252,882 - OH686_20800 0.18 -0.7
4,252,972 + OH686_20800 0.32 -0.1
4,252,973 - OH686_20800 0.32 +0.8
4,252,973 - OH686_20800 0.32 -0.4
4,252,973 - OH686_20800 0.32 -0.1
4,252,973 - OH686_20800 0.32 +0.5
4,253,058 + OH686_20800 0.45 -0.4
4,253,059 - OH686_20800 0.46 -0.3
4,253,059 - OH686_20800 0.46 +1.6
4,253,059 - OH686_20800 0.46 -0.9
4,253,060 + OH686_20800 0.46 +0.9
4,253,060 + OH686_20800 0.46 -0.2
4,253,060 + OH686_20800 0.46 +0.2
4,253,060 + OH686_20800 0.46 +1.1
4,253,060 + OH686_20800 0.46 -0.1
4,253,060 + OH686_20800 0.46 +0.1
4,253,060 + OH686_20800 0.46 +0.6
4,253,060 + OH686_20800 0.46 -0.5
4,253,060 + OH686_20800 0.46 +0.7
4,253,061 - OH686_20800 0.46 +0.4
4,253,061 - OH686_20800 0.46 -0.4
4,253,061 - OH686_20800 0.46 -0.1
4,253,061 - OH686_20800 0.46 -0.2
4,253,061 - OH686_20800 0.46 +0.2
4,253,061 - OH686_20800 0.46 +0.5
4,253,061 - OH686_20800 0.46 -0.9
4,253,061 - OH686_20800 0.46 -0.3
4,253,061 - OH686_20800 0.46 +0.2
4,253,061 - OH686_20800 0.46 +0.3
4,253,061 - OH686_20800 0.46 +0.4
4,253,061 - OH686_20800 0.46 -0.1
4,253,061 - OH686_20800 0.46 -0.3
4,253,061 - OH686_20800 0.46 -0.2
4,253,061 - OH686_20800 0.46 +0.3
4,253,061 - OH686_20800 0.46 +0.4
4,253,061 - OH686_20800 0.46 +0.7
4,253,442 + -0.1
4,253,442 + +0.1
4,253,442 + -0.3
4,253,442 + -1.1
4,253,443 - +1.3
4,253,443 - +0.1
4,253,459 + -0.2
4,253,459 + +0.4
4,253,459 + +0.0
4,253,459 + -0.2
4,253,460 - -0.5
4,253,460 - +1.4
4,253,495 + OH686_20805 0.12 +2.1
4,253,495 + OH686_20805 0.12 -0.1
4,253,495 + OH686_20805 0.12 -0.2
4,253,495 + OH686_20805 0.12 +0.1
4,253,495 + OH686_20805 0.12 -0.4
4,253,495 + OH686_20805 0.12 -0.9
4,253,495 + OH686_20805 0.12 -0.6
4,253,495 + OH686_20805 0.12 -0.9
4,253,495 + OH686_20805 0.12 +0.5
4,253,495 + OH686_20805 0.12 +0.2
4,253,495 + OH686_20805 0.12 -0.0
4,253,495 + OH686_20805 0.12 -0.4
4,253,495 + OH686_20805 0.12 +0.3
4,253,495 + OH686_20805 0.12 +0.4
4,253,495 + OH686_20805 0.12 -0.7
4,253,495 + OH686_20805 0.12 +0.7
4,253,495 + OH686_20805 0.12 -0.5
4,253,495 + OH686_20805 0.12 -0.2
4,253,495 + OH686_20805 0.12 -1.3
4,253,495 + OH686_20805 0.12 +0.4
4,253,496 - OH686_20805 0.12 -1.6
4,253,496 - OH686_20805 0.12 +0.3
4,253,496 - OH686_20805 0.12 +0.9
4,253,496 - OH686_20805 0.12 +1.3
4,253,496 - OH686_20805 0.12 +0.2
4,253,496 - OH686_20805 0.12 +0.6
4,253,496 - OH686_20805 0.12 -0.4
4,253,496 - OH686_20805 0.12 -0.4
4,253,496 - OH686_20805 0.12 -0.1
4,253,496 - OH686_20805 0.12 -1.9
4,253,496 - OH686_20805 0.12 -0.8
4,253,496 - OH686_20805 0.12 -0.1
4,253,496 - OH686_20805 0.12 +0.4
4,253,496 - OH686_20805 0.12 +0.2
4,253,496 - OH686_20805 0.12 +0.2
4,253,496 - OH686_20805 0.12 -0.4
4,253,496 - OH686_20805 0.12 -0.9
4,253,496 - OH686_20805 0.12 -0.1
4,253,496 - OH686_20805 0.12 -0.4
4,253,496 - OH686_20805 0.12 -0.1
4,253,561 + OH686_20805 0.20 -0.2
4,253,562 - OH686_20805 0.20 -0.8
4,253,562 - OH686_20805 0.20 +0.2
4,253,562 - OH686_20805 0.20 +1.1
4,253,624 + OH686_20805 0.28 -1.4
4,253,624 + OH686_20805 0.28 -0.1
4,253,624 + OH686_20805 0.28 +0.1
4,253,624 + OH686_20805 0.28 -0.4
4,253,624 + OH686_20805 0.28 +0.8
4,253,624 + OH686_20805 0.28 -0.7
4,253,624 + OH686_20805 0.28 +0.4
4,253,624 + OH686_20805 0.28 +0.2
4,253,624 + OH686_20805 0.28 -0.1
4,253,624 + OH686_20805 0.28 -1.4
4,253,625 - OH686_20805 0.28 -0.4
4,253,625 - OH686_20805 0.28 -1.1
4,253,625 - OH686_20805 0.28 -0.8
4,253,625 - OH686_20805 0.28 +0.4
4,253,625 - OH686_20805 0.28 -0.3
4,253,625 - OH686_20805 0.28 -0.0
4,253,625 - OH686_20805 0.28 -1.1
4,253,625 - OH686_20805 0.28 -0.3
4,253,625 - OH686_20805 0.28 -0.1
4,253,625 - OH686_20805 0.28 -0.3
4,253,625 - OH686_20805 0.28 +0.4
4,253,633 + OH686_20805 0.29 +1.3
4,253,633 + OH686_20805 0.29 -0.1
4,253,633 + OH686_20805 0.29 -1.2
4,253,633 + OH686_20805 0.29 -1.1
4,253,633 + OH686_20805 0.29 +0.9
4,253,634 - OH686_20805 0.29 -0.2
4,253,634 - OH686_20805 0.29 +0.1
4,253,634 - OH686_20805 0.29 -0.3
4,253,634 - OH686_20805 0.29 -0.5
4,253,634 - OH686_20805 0.29 +0.3
4,253,798 + OH686_20805 0.49 -0.6
4,253,798 + OH686_20805 0.49 -0.9
4,253,799 - OH686_20805 0.49 -2.2
4,253,799 - OH686_20805 0.49 -0.2
4,253,807 + OH686_20805 0.50 +0.4
4,253,807 + OH686_20805 0.50 -0.4
4,253,807 + OH686_20805 0.50 -0.0
4,253,807 + OH686_20805 0.50 +0.9
4,253,807 + OH686_20805 0.50 -1.2
4,253,807 + OH686_20805 0.50 -1.5
4,253,807 + OH686_20805 0.50 -0.3
4,253,807 + OH686_20805 0.50 -0.6
4,253,808 - OH686_20805 0.50 -1.1
4,253,808 - OH686_20805 0.50 +0.1
4,253,808 - OH686_20805 0.50 +1.5
4,253,808 - OH686_20805 0.50 +0.4
4,253,808 - OH686_20805 0.50 -2.0
4,253,808 - OH686_20805 0.50 +0.1
4,253,809 + OH686_20805 0.50 +0.4
4,253,809 + OH686_20805 0.50 -0.9
4,253,809 + OH686_20805 0.50 -1.1
4,253,809 + OH686_20805 0.50 -0.1
4,253,809 + OH686_20805 0.50 -0.8
4,253,809 + OH686_20805 0.50 -1.3
4,253,810 - OH686_20805 0.51 +1.3
4,254,184 + +1.3
4,254,209 + +0.5
4,254,209 + +0.1
4,254,209 + -2.1
4,254,209 + -0.3
4,254,209 + +1.1
4,254,209 + +0.3
4,254,210 - +0.0
4,254,210 - +0.9
4,254,210 - -0.1
4,254,210 - -1.8
4,254,210 - -0.1
4,254,210 - -0.1
4,254,210 - -1.0

Or see this region's nucleotide sequence