Strain Fitness in Pseudomonas sp. S08-1 around OH686_17540

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17535 and OH686_17540 are separated by 34 nucleotidesOH686_17540 and OH686_17545 overlap by 8 nucleotides OH686_17535: OH686_17535 - histidine--tRNA ligase, at 3,660,594 to 3,661,880 _17535 OH686_17540: OH686_17540 - UPF0070 protein YfgM, at 3,661,915 to 3,662,550 _17540 OH686_17545: OH686_17545 - outer membrane assembly lipoprotein YfgL, at 3,662,543 to 3,663,694 _17545 Position (kb) 3661 3662 3663Strain fitness (log2 ratio) -1 0 1at 3661.885 kb on - strandat 3661.885 kb on - strandat 3661.902 kb on + strandat 3661.902 kb on + strandat 3661.902 kb on + strandat 3661.902 kb on + strandat 3661.903 kb on - strandat 3661.903 kb on - strandat 3661.903 kb on - strandat 3661.903 kb on - strandat 3661.903 kb on - strandat 3662.035 kb on + strand, within OH686_17540at 3662.035 kb on + strand, within OH686_17540at 3662.071 kb on + strand, within OH686_17540at 3662.071 kb on + strand, within OH686_17540at 3662.176 kb on + strand, within OH686_17540at 3662.176 kb on + strand, within OH686_17540at 3662.185 kb on + strand, within OH686_17540at 3662.185 kb on + strand, within OH686_17540

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,661,885 - +0.4
3,661,885 - -1.1
3,661,902 + -0.4
3,661,902 + +0.5
3,661,902 + -0.2
3,661,902 + -1.6
3,661,903 - +0.1
3,661,903 - -0.9
3,661,903 - -0.4
3,661,903 - -0.4
3,661,903 - -0.1
3,662,035 + OH686_17540 0.19 -0.1
3,662,035 + OH686_17540 0.19 +0.2
3,662,071 + OH686_17540 0.25 -0.9
3,662,071 + OH686_17540 0.25 -0.1
3,662,176 + OH686_17540 0.41 -0.2
3,662,176 + OH686_17540 0.41 -1.7
3,662,185 + OH686_17540 0.42 -1.2
3,662,185 + OH686_17540 0.42 -0.4

Or see this region's nucleotide sequence