Strain Fitness in Pseudomonas sp. S08-1 around OH686_17525

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17515 and OH686_17520 are separated by 13 nucleotidesOH686_17520 and OH686_17525 overlap by 1 nucleotidesOH686_17525 and OH686_17530 are separated by 8 nucleotides OH686_17515: OH686_17515 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 3,656,336 to 3,657,481 _17515 OH686_17520: OH686_17520 - type IV pilus biogenesis/stability protein PilW, at 3,657,495 to 3,658,256 _17520 OH686_17525: OH686_17525 - Cytoskeleton protein RodZ, at 3,658,256 to 3,659,317 _17525 OH686_17530: OH686_17530 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,659,326 to 3,660,438 _17530 Position (kb) 3658 3659 3660Strain fitness (log2 ratio) -2 -1 0 1 2at 3657.257 kb on + strand, within OH686_17515at 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.416 kb on + strandat 3657.418 kb on + strandat 3657.426 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.489 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.516 kb on + strandat 3657.615 kb on + strand, within OH686_17520at 3657.615 kb on + strand, within OH686_17520at 3657.615 kb on + strand, within OH686_17520at 3657.676 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.727 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.736 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.738 kb on + strand, within OH686_17520at 3657.744 kb on + strand, within OH686_17520at 3657.744 kb on + strand, within OH686_17520at 3657.788 kb on + strand, within OH686_17520at 3657.788 kb on + strand, within OH686_17520at 3657.788 kb on + strand, within OH686_17520at 3657.828 kb on + strand, within OH686_17520at 3657.828 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.870 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.879 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.881 kb on + strand, within OH686_17520at 3657.906 kb on + strand, within OH686_17520at 3657.906 kb on + strand, within OH686_17520at 3657.906 kb on + strand, within OH686_17520at 3657.937 kb on + strand, within OH686_17520at 3657.937 kb on + strand, within OH686_17520at 3657.938 kb on - strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.068 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.086 kb on + strand, within OH686_17520at 3658.089 kb on + strand, within OH686_17520at 3658.089 kb on + strand, within OH686_17520at 3658.212 kb on + strandat 3658.230 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.239 kb on + strandat 3658.264 kb on + strandat 3658.432 kb on + strand, within OH686_17525at 3658.448 kb on + strand, within OH686_17525at 3658.448 kb on + strand, within OH686_17525at 3658.448 kb on + strand, within OH686_17525at 3658.450 kb on + strand, within OH686_17525at 3658.514 kb on + strand, within OH686_17525at 3658.514 kb on + strand, within OH686_17525at 3658.540 kb on + strand, within OH686_17525at 3658.561 kb on + strand, within OH686_17525at 3658.870 kb on + strand, within OH686_17525

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,657,257 + OH686_17515 0.80 +1.1
3,657,416 + -0.9
3,657,416 + -0.4
3,657,416 + -0.2
3,657,416 + +0.9
3,657,416 + +0.7
3,657,416 + +1.0
3,657,416 + +0.0
3,657,416 + +0.6
3,657,416 + -0.9
3,657,418 + -0.4
3,657,426 + +0.4
3,657,489 + +0.1
3,657,489 + -0.8
3,657,489 + -0.1
3,657,489 + +0.2
3,657,489 + +0.2
3,657,489 + -0.3
3,657,489 + +0.2
3,657,516 + +0.4
3,657,516 + +0.2
3,657,516 + +0.7
3,657,516 + -0.1
3,657,516 + -2.1
3,657,516 + +0.2
3,657,516 + +0.7
3,657,516 + -0.2
3,657,516 + +0.7
3,657,615 + OH686_17520 0.16 +0.4
3,657,615 + OH686_17520 0.16 +0.1
3,657,615 + OH686_17520 0.16 -0.5
3,657,676 + OH686_17520 0.24 +0.7
3,657,727 + OH686_17520 0.30 +0.9
3,657,727 + OH686_17520 0.30 -0.3
3,657,727 + OH686_17520 0.30 -0.5
3,657,727 + OH686_17520 0.30 -1.5
3,657,727 + OH686_17520 0.30 -2.3
3,657,727 + OH686_17520 0.30 +1.2
3,657,736 + OH686_17520 0.32 -0.1
3,657,736 + OH686_17520 0.32 +0.4
3,657,736 + OH686_17520 0.32 +1.0
3,657,736 + OH686_17520 0.32 -0.5
3,657,736 + OH686_17520 0.32 +0.4
3,657,736 + OH686_17520 0.32 -0.1
3,657,736 + OH686_17520 0.32 +0.4
3,657,736 + OH686_17520 0.32 +0.8
3,657,738 + OH686_17520 0.32 +0.2
3,657,738 + OH686_17520 0.32 +0.0
3,657,738 + OH686_17520 0.32 +0.0
3,657,738 + OH686_17520 0.32 +0.2
3,657,738 + OH686_17520 0.32 -0.1
3,657,738 + OH686_17520 0.32 -0.3
3,657,738 + OH686_17520 0.32 -0.2
3,657,744 + OH686_17520 0.33 +0.1
3,657,744 + OH686_17520 0.33 -0.4
3,657,788 + OH686_17520 0.38 +0.4
3,657,788 + OH686_17520 0.38 -0.9
3,657,788 + OH686_17520 0.38 -0.2
3,657,828 + OH686_17520 0.44 -0.4
3,657,828 + OH686_17520 0.44 +0.4
3,657,870 + OH686_17520 0.49 -0.3
3,657,870 + OH686_17520 0.49 +1.7
3,657,870 + OH686_17520 0.49 +0.2
3,657,870 + OH686_17520 0.49 -0.0
3,657,870 + OH686_17520 0.49 -0.9
3,657,870 + OH686_17520 0.49 -0.2
3,657,879 + OH686_17520 0.50 -0.9
3,657,879 + OH686_17520 0.50 -0.6
3,657,879 + OH686_17520 0.50 -0.8
3,657,879 + OH686_17520 0.50 +0.3
3,657,879 + OH686_17520 0.50 +0.1
3,657,879 + OH686_17520 0.50 +0.8
3,657,879 + OH686_17520 0.50 -0.5
3,657,881 + OH686_17520 0.51 +0.2
3,657,881 + OH686_17520 0.51 -0.5
3,657,881 + OH686_17520 0.51 +1.6
3,657,881 + OH686_17520 0.51 +0.3
3,657,881 + OH686_17520 0.51 +0.1
3,657,881 + OH686_17520 0.51 -0.6
3,657,881 + OH686_17520 0.51 +1.1
3,657,881 + OH686_17520 0.51 +0.1
3,657,881 + OH686_17520 0.51 -0.3
3,657,881 + OH686_17520 0.51 +1.1
3,657,881 + OH686_17520 0.51 +0.6
3,657,881 + OH686_17520 0.51 -0.1
3,657,881 + OH686_17520 0.51 -0.1
3,657,881 + OH686_17520 0.51 +0.0
3,657,881 + OH686_17520 0.51 +0.1
3,657,881 + OH686_17520 0.51 +0.2
3,657,881 + OH686_17520 0.51 -0.1
3,657,906 + OH686_17520 0.54 -0.6
3,657,906 + OH686_17520 0.54 -0.4
3,657,906 + OH686_17520 0.54 -0.1
3,657,937 + OH686_17520 0.58 +0.2
3,657,937 + OH686_17520 0.58 -0.4
3,657,938 - OH686_17520 0.58 -0.1
3,658,068 + OH686_17520 0.75 -0.8
3,658,068 + OH686_17520 0.75 -1.4
3,658,068 + OH686_17520 0.75 -0.1
3,658,068 + OH686_17520 0.75 -0.7
3,658,068 + OH686_17520 0.75 -0.3
3,658,068 + OH686_17520 0.75 +0.5
3,658,086 + OH686_17520 0.78 +0.6
3,658,086 + OH686_17520 0.78 -0.2
3,658,086 + OH686_17520 0.78 +0.2
3,658,086 + OH686_17520 0.78 +0.1
3,658,086 + OH686_17520 0.78 -0.7
3,658,086 + OH686_17520 0.78 +0.5
3,658,086 + OH686_17520 0.78 -0.2
3,658,086 + OH686_17520 0.78 +0.1
3,658,089 + OH686_17520 0.78 -0.0
3,658,089 + OH686_17520 0.78 -0.9
3,658,212 + -1.4
3,658,230 + +0.0
3,658,239 + +0.4
3,658,239 + +1.9
3,658,239 + +1.1
3,658,239 + -0.3
3,658,239 + +0.2
3,658,239 + -0.2
3,658,239 + +0.1
3,658,239 + +0.1
3,658,239 + +1.2
3,658,239 + +0.1
3,658,239 + -0.0
3,658,239 + -0.2
3,658,239 + +0.5
3,658,264 + +0.9
3,658,432 + OH686_17525 0.17 -1.0
3,658,448 + OH686_17525 0.18 -0.9
3,658,448 + OH686_17525 0.18 -1.1
3,658,448 + OH686_17525 0.18 -0.6
3,658,450 + OH686_17525 0.18 -1.2
3,658,514 + OH686_17525 0.24 -0.1
3,658,514 + OH686_17525 0.24 -0.1
3,658,540 + OH686_17525 0.27 +0.2
3,658,561 + OH686_17525 0.29 -0.1
3,658,870 + OH686_17525 0.58 -0.2

Or see this region's nucleotide sequence