Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_17515 and OH686_17520 are separated by 13 nucleotides OH686_17520 and OH686_17525 overlap by 1 nucleotides OH686_17525 and OH686_17530 are separated by 8 nucleotides
OH686_17515: OH686_17515 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 3,656,336 to 3,657,481
_17515
OH686_17520: OH686_17520 - type IV pilus biogenesis/stability protein PilW, at 3,657,495 to 3,658,256
_17520
OH686_17525: OH686_17525 - Cytoskeleton protein RodZ, at 3,658,256 to 3,659,317
_17525
OH686_17530: OH686_17530 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,659,326 to 3,660,438
_17530
Position (kb)
3658
3659
3660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3657.257 kb on + strand, within OH686_17515 at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.416 kb on + strand at 3657.418 kb on + strand at 3657.426 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.489 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.516 kb on + strand at 3657.615 kb on + strand, within OH686_17520 at 3657.615 kb on + strand, within OH686_17520 at 3657.615 kb on + strand, within OH686_17520 at 3657.676 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.727 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.736 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.738 kb on + strand, within OH686_17520 at 3657.744 kb on + strand, within OH686_17520 at 3657.744 kb on + strand, within OH686_17520 at 3657.788 kb on + strand, within OH686_17520 at 3657.788 kb on + strand, within OH686_17520 at 3657.788 kb on + strand, within OH686_17520 at 3657.828 kb on + strand, within OH686_17520 at 3657.828 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.870 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.879 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.881 kb on + strand, within OH686_17520 at 3657.906 kb on + strand, within OH686_17520 at 3657.906 kb on + strand, within OH686_17520 at 3657.906 kb on + strand, within OH686_17520 at 3657.937 kb on + strand, within OH686_17520 at 3657.937 kb on + strand, within OH686_17520 at 3657.938 kb on - strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.068 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.086 kb on + strand, within OH686_17520 at 3658.089 kb on + strand, within OH686_17520 at 3658.089 kb on + strand, within OH686_17520 at 3658.212 kb on + strand at 3658.230 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.239 kb on + strand at 3658.264 kb on + strand at 3658.432 kb on + strand, within OH686_17525 at 3658.448 kb on + strand, within OH686_17525 at 3658.448 kb on + strand, within OH686_17525 at 3658.448 kb on + strand, within OH686_17525 at 3658.450 kb on + strand, within OH686_17525 at 3658.514 kb on + strand, within OH686_17525 at 3658.514 kb on + strand, within OH686_17525 at 3658.540 kb on + strand, within OH686_17525 at 3658.561 kb on + strand, within OH686_17525 at 3658.870 kb on + strand, within OH686_17525
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,657,257 + OH686_17515 0.80 +1.1 3,657,416 + -0.9 3,657,416 + -0.4 3,657,416 + -0.2 3,657,416 + +0.9 3,657,416 + +0.7 3,657,416 + +1.0 3,657,416 + +0.0 3,657,416 + +0.6 3,657,416 + -0.9 3,657,418 + -0.4 3,657,426 + +0.4 3,657,489 + +0.1 3,657,489 + -0.8 3,657,489 + -0.1 3,657,489 + +0.2 3,657,489 + +0.2 3,657,489 + -0.3 3,657,489 + +0.2 3,657,516 + +0.4 3,657,516 + +0.2 3,657,516 + +0.7 3,657,516 + -0.1 3,657,516 + -2.1 3,657,516 + +0.2 3,657,516 + +0.7 3,657,516 + -0.2 3,657,516 + +0.7 3,657,615 + OH686_17520 0.16 +0.4 3,657,615 + OH686_17520 0.16 +0.1 3,657,615 + OH686_17520 0.16 -0.5 3,657,676 + OH686_17520 0.24 +0.7 3,657,727 + OH686_17520 0.30 +0.9 3,657,727 + OH686_17520 0.30 -0.3 3,657,727 + OH686_17520 0.30 -0.5 3,657,727 + OH686_17520 0.30 -1.5 3,657,727 + OH686_17520 0.30 -2.3 3,657,727 + OH686_17520 0.30 +1.2 3,657,736 + OH686_17520 0.32 -0.1 3,657,736 + OH686_17520 0.32 +0.4 3,657,736 + OH686_17520 0.32 +1.0 3,657,736 + OH686_17520 0.32 -0.5 3,657,736 + OH686_17520 0.32 +0.4 3,657,736 + OH686_17520 0.32 -0.1 3,657,736 + OH686_17520 0.32 +0.4 3,657,736 + OH686_17520 0.32 +0.8 3,657,738 + OH686_17520 0.32 +0.2 3,657,738 + OH686_17520 0.32 +0.0 3,657,738 + OH686_17520 0.32 +0.0 3,657,738 + OH686_17520 0.32 +0.2 3,657,738 + OH686_17520 0.32 -0.1 3,657,738 + OH686_17520 0.32 -0.3 3,657,738 + OH686_17520 0.32 -0.2 3,657,744 + OH686_17520 0.33 +0.1 3,657,744 + OH686_17520 0.33 -0.4 3,657,788 + OH686_17520 0.38 +0.4 3,657,788 + OH686_17520 0.38 -0.9 3,657,788 + OH686_17520 0.38 -0.2 3,657,828 + OH686_17520 0.44 -0.4 3,657,828 + OH686_17520 0.44 +0.4 3,657,870 + OH686_17520 0.49 -0.3 3,657,870 + OH686_17520 0.49 +1.7 3,657,870 + OH686_17520 0.49 +0.2 3,657,870 + OH686_17520 0.49 -0.0 3,657,870 + OH686_17520 0.49 -0.9 3,657,870 + OH686_17520 0.49 -0.2 3,657,879 + OH686_17520 0.50 -0.9 3,657,879 + OH686_17520 0.50 -0.6 3,657,879 + OH686_17520 0.50 -0.8 3,657,879 + OH686_17520 0.50 +0.3 3,657,879 + OH686_17520 0.50 +0.1 3,657,879 + OH686_17520 0.50 +0.8 3,657,879 + OH686_17520 0.50 -0.5 3,657,881 + OH686_17520 0.51 +0.2 3,657,881 + OH686_17520 0.51 -0.5 3,657,881 + OH686_17520 0.51 +1.6 3,657,881 + OH686_17520 0.51 +0.3 3,657,881 + OH686_17520 0.51 +0.1 3,657,881 + OH686_17520 0.51 -0.6 3,657,881 + OH686_17520 0.51 +1.1 3,657,881 + OH686_17520 0.51 +0.1 3,657,881 + OH686_17520 0.51 -0.3 3,657,881 + OH686_17520 0.51 +1.1 3,657,881 + OH686_17520 0.51 +0.6 3,657,881 + OH686_17520 0.51 -0.1 3,657,881 + OH686_17520 0.51 -0.1 3,657,881 + OH686_17520 0.51 +0.0 3,657,881 + OH686_17520 0.51 +0.1 3,657,881 + OH686_17520 0.51 +0.2 3,657,881 + OH686_17520 0.51 -0.1 3,657,906 + OH686_17520 0.54 -0.6 3,657,906 + OH686_17520 0.54 -0.4 3,657,906 + OH686_17520 0.54 -0.1 3,657,937 + OH686_17520 0.58 +0.2 3,657,937 + OH686_17520 0.58 -0.4 3,657,938 - OH686_17520 0.58 -0.1 3,658,068 + OH686_17520 0.75 -0.8 3,658,068 + OH686_17520 0.75 -1.4 3,658,068 + OH686_17520 0.75 -0.1 3,658,068 + OH686_17520 0.75 -0.7 3,658,068 + OH686_17520 0.75 -0.3 3,658,068 + OH686_17520 0.75 +0.5 3,658,086 + OH686_17520 0.78 +0.6 3,658,086 + OH686_17520 0.78 -0.2 3,658,086 + OH686_17520 0.78 +0.2 3,658,086 + OH686_17520 0.78 +0.1 3,658,086 + OH686_17520 0.78 -0.7 3,658,086 + OH686_17520 0.78 +0.5 3,658,086 + OH686_17520 0.78 -0.2 3,658,086 + OH686_17520 0.78 +0.1 3,658,089 + OH686_17520 0.78 -0.0 3,658,089 + OH686_17520 0.78 -0.9 3,658,212 + -1.4 3,658,230 + +0.0 3,658,239 + +0.4 3,658,239 + +1.9 3,658,239 + +1.1 3,658,239 + -0.3 3,658,239 + +0.2 3,658,239 + -0.2 3,658,239 + +0.1 3,658,239 + +0.1 3,658,239 + +1.2 3,658,239 + +0.1 3,658,239 + -0.0 3,658,239 + -0.2 3,658,239 + +0.5 3,658,264 + +0.9 3,658,432 + OH686_17525 0.17 -1.0 3,658,448 + OH686_17525 0.18 -0.9 3,658,448 + OH686_17525 0.18 -1.1 3,658,448 + OH686_17525 0.18 -0.6 3,658,450 + OH686_17525 0.18 -1.2 3,658,514 + OH686_17525 0.24 -0.1 3,658,514 + OH686_17525 0.24 -0.1 3,658,540 + OH686_17525 0.27 +0.2 3,658,561 + OH686_17525 0.29 -0.1 3,658,870 + OH686_17525 0.58 -0.2
Or see this region's nucleotide sequence