Strain Fitness in Pseudomonas sp. S08-1 around OH686_14405

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14400 and OH686_14405 are separated by 108 nucleotidesOH686_14405 and OH686_14410 are separated by 39 nucleotides OH686_14400: OH686_14400 - hypothetical protein, at 3,008,385 to 3,009,308 _14400 OH686_14405: OH686_14405 - hypothetical protein, at 3,009,417 to 3,010,166 _14405 OH686_14410: OH686_14410 - Glycosyl transferase, group 1, at 3,010,206 to 3,012,143 _14410 Position (kb) 3009 3010 3011Strain fitness (log2 ratio) -2 -1 0 1 2at 3008.426 kb on + strandat 3008.610 kb on + strand, within OH686_14400at 3008.610 kb on + strand, within OH686_14400at 3008.610 kb on + strand, within OH686_14400at 3008.664 kb on + strand, within OH686_14400at 3008.664 kb on + strand, within OH686_14400at 3008.664 kb on + strand, within OH686_14400at 3008.713 kb on + strand, within OH686_14400at 3008.713 kb on + strand, within OH686_14400at 3008.713 kb on + strand, within OH686_14400at 3008.713 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.731 kb on + strand, within OH686_14400at 3008.775 kb on + strand, within OH686_14400at 3008.775 kb on + strand, within OH686_14400at 3008.828 kb on + strand, within OH686_14400at 3008.828 kb on + strand, within OH686_14400at 3008.943 kb on + strand, within OH686_14400at 3008.968 kb on + strand, within OH686_14400at 3009.023 kb on + strand, within OH686_14400at 3009.079 kb on + strand, within OH686_14400at 3009.187 kb on + strand, within OH686_14400at 3009.187 kb on + strand, within OH686_14400at 3009.190 kb on + strand, within OH686_14400at 3009.190 kb on + strand, within OH686_14400at 3009.269 kb on + strandat 3009.311 kb on - strandat 3009.366 kb on + strandat 3009.366 kb on + strandat 3009.367 kb on - strandat 3009.374 kb on + strandat 3009.375 kb on - strandat 3009.378 kb on - strandat 3009.476 kb on + strandat 3009.527 kb on + strand, within OH686_14405at 3009.527 kb on + strand, within OH686_14405at 3009.527 kb on + strand, within OH686_14405at 3009.578 kb on + strand, within OH686_14405at 3009.685 kb on + strand, within OH686_14405at 3009.687 kb on + strand, within OH686_14405at 3009.687 kb on + strand, within OH686_14405at 3009.962 kb on + strand, within OH686_14405at 3009.962 kb on + strand, within OH686_14405at 3009.967 kb on + strand, within OH686_14405at 3009.968 kb on - strand, within OH686_14405at 3009.997 kb on + strand, within OH686_14405at 3009.998 kb on - strand, within OH686_14405at 3009.998 kb on - strand, within OH686_14405at 3010.075 kb on + strand, within OH686_14405at 3010.075 kb on + strand, within OH686_14405at 3010.076 kb on - strand, within OH686_14405at 3010.076 kb on - strand, within OH686_14405at 3010.090 kb on + strand, within OH686_14405at 3010.090 kb on + strand, within OH686_14405at 3010.090 kb on + strand, within OH686_14405at 3010.222 kb on + strandat 3010.244 kb on + strandat 3010.339 kb on + strandat 3010.371 kb on + strandat 3010.373 kb on + strandat 3010.388 kb on + strandat 3010.527 kb on + strand, within OH686_14410at 3010.527 kb on + strand, within OH686_14410at 3010.566 kb on + strand, within OH686_14410at 3010.566 kb on + strand, within OH686_14410at 3010.685 kb on + strand, within OH686_14410at 3010.698 kb on + strand, within OH686_14410at 3010.698 kb on + strand, within OH686_14410at 3010.698 kb on + strand, within OH686_14410at 3010.757 kb on + strand, within OH686_14410at 3010.792 kb on + strand, within OH686_14410at 3010.930 kb on + strand, within OH686_14410at 3010.930 kb on + strand, within OH686_14410at 3010.930 kb on + strand, within OH686_14410at 3010.930 kb on + strand, within OH686_14410at 3010.988 kb on + strand, within OH686_14410at 3011.054 kb on + strand, within OH686_14410at 3011.054 kb on + strand, within OH686_14410at 3011.054 kb on + strand, within OH686_14410at 3011.054 kb on + strand, within OH686_14410at 3011.054 kb on + strand, within OH686_14410at 3011.139 kb on + strand, within OH686_14410at 3011.139 kb on + strand, within OH686_14410

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,008,426 + -0.4
3,008,610 + OH686_14400 0.24 -0.1
3,008,610 + OH686_14400 0.24 -2.1
3,008,610 + OH686_14400 0.24 -2.1
3,008,664 + OH686_14400 0.30 -0.0
3,008,664 + OH686_14400 0.30 -0.9
3,008,664 + OH686_14400 0.30 -0.6
3,008,713 + OH686_14400 0.35 -1.3
3,008,713 + OH686_14400 0.35 +0.5
3,008,713 + OH686_14400 0.35 -1.1
3,008,713 + OH686_14400 0.35 -0.8
3,008,731 + OH686_14400 0.37 -0.5
3,008,731 + OH686_14400 0.37 -1.8
3,008,731 + OH686_14400 0.37 -1.4
3,008,731 + OH686_14400 0.37 +0.0
3,008,731 + OH686_14400 0.37 -0.1
3,008,731 + OH686_14400 0.37 +0.3
3,008,731 + OH686_14400 0.37 -2.4
3,008,775 + OH686_14400 0.42 +0.6
3,008,775 + OH686_14400 0.42 -1.0
3,008,828 + OH686_14400 0.48 +1.9
3,008,828 + OH686_14400 0.48 -0.0
3,008,943 + OH686_14400 0.60 +0.2
3,008,968 + OH686_14400 0.63 -0.1
3,009,023 + OH686_14400 0.69 -1.0
3,009,079 + OH686_14400 0.75 +0.2
3,009,187 + OH686_14400 0.87 -0.8
3,009,187 + OH686_14400 0.87 -0.5
3,009,190 + OH686_14400 0.87 +0.6
3,009,190 + OH686_14400 0.87 +0.3
3,009,269 + -1.6
3,009,311 - -1.0
3,009,366 + -2.0
3,009,366 + -1.7
3,009,367 - -0.9
3,009,374 + +0.2
3,009,375 - +0.9
3,009,378 - -2.3
3,009,476 + -0.3
3,009,527 + OH686_14405 0.15 -0.4
3,009,527 + OH686_14405 0.15 -1.5
3,009,527 + OH686_14405 0.15 +0.1
3,009,578 + OH686_14405 0.21 +1.0
3,009,685 + OH686_14405 0.36 -1.1
3,009,687 + OH686_14405 0.36 -1.0
3,009,687 + OH686_14405 0.36 +0.3
3,009,962 + OH686_14405 0.73 -0.5
3,009,962 + OH686_14405 0.73 +0.5
3,009,967 + OH686_14405 0.73 -0.8
3,009,968 - OH686_14405 0.73 -0.7
3,009,997 + OH686_14405 0.77 -0.4
3,009,998 - OH686_14405 0.77 -0.4
3,009,998 - OH686_14405 0.77 -0.1
3,010,075 + OH686_14405 0.88 -0.1
3,010,075 + OH686_14405 0.88 -0.6
3,010,076 - OH686_14405 0.88 -0.4
3,010,076 - OH686_14405 0.88 -1.4
3,010,090 + OH686_14405 0.90 -1.0
3,010,090 + OH686_14405 0.90 -1.0
3,010,090 + OH686_14405 0.90 +0.9
3,010,222 + -2.0
3,010,244 + +0.3
3,010,339 + -1.3
3,010,371 + +0.3
3,010,373 + +0.0
3,010,388 + -0.7
3,010,527 + OH686_14410 0.17 -0.7
3,010,527 + OH686_14410 0.17 -1.0
3,010,566 + OH686_14410 0.19 -0.1
3,010,566 + OH686_14410 0.19 +0.9
3,010,685 + OH686_14410 0.25 -0.9
3,010,698 + OH686_14410 0.25 -0.1
3,010,698 + OH686_14410 0.25 -0.1
3,010,698 + OH686_14410 0.25 -2.2
3,010,757 + OH686_14410 0.28 -0.1
3,010,792 + OH686_14410 0.30 -1.6
3,010,930 + OH686_14410 0.37 -0.1
3,010,930 + OH686_14410 0.37 -1.4
3,010,930 + OH686_14410 0.37 -1.0
3,010,930 + OH686_14410 0.37 -0.1
3,010,988 + OH686_14410 0.40 -0.1
3,011,054 + OH686_14410 0.44 -0.1
3,011,054 + OH686_14410 0.44 -1.4
3,011,054 + OH686_14410 0.44 -1.1
3,011,054 + OH686_14410 0.44 -1.4
3,011,054 + OH686_14410 0.44 -1.7
3,011,139 + OH686_14410 0.48 -0.4
3,011,139 + OH686_14410 0.48 -1.4

Or see this region's nucleotide sequence