Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_12475 and OH686_12480 are separated by 88 nucleotides OH686_12480 and OH686_12485 are separated by 1 nucleotides OH686_12485 and OH686_12490 overlap by 4 nucleotides
OH686_12475: OH686_12475 - Murein-DD-endopeptidase , at 2,626,004 to 2,626,897
_12475
OH686_12480: OH686_12480 - MadN protein, at 2,626,986 to 2,627,852
_12480
OH686_12485: OH686_12485 - Shikimate 5-dehydrogenase I alpha , at 2,627,854 to 2,628,675
_12485
OH686_12490: OH686_12490 - Coproporphyrinogen III oxidase, aerobic , at 2,628,672 to 2,629,628
_12490
Position (kb)
2627
2628
2629 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2626.910 kb on + strand at 2626.967 kb on + strand at 2626.967 kb on + strand at 2626.967 kb on + strand at 2626.967 kb on + strand at 2626.967 kb on + strand at 2626.968 kb on + strand at 2626.968 kb on - strand at 2626.968 kb on - strand at 2626.968 kb on - strand at 2626.968 kb on - strand at 2626.968 kb on - strand at 2626.968 kb on - strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.969 kb on + strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2626.970 kb on - strand at 2627.191 kb on + strand, within OH686_12480 at 2627.191 kb on + strand, within OH686_12480 at 2627.191 kb on + strand, within OH686_12480 at 2627.191 kb on + strand, within OH686_12480 at 2627.192 kb on - strand, within OH686_12480 at 2627.192 kb on - strand, within OH686_12480 at 2627.192 kb on - strand, within OH686_12480 at 2627.192 kb on - strand, within OH686_12480 at 2627.192 kb on - strand, within OH686_12480 at 2627.232 kb on + strand, within OH686_12480 at 2627.233 kb on - strand, within OH686_12480 at 2627.233 kb on - strand, within OH686_12480 at 2627.233 kb on - strand, within OH686_12480 at 2627.362 kb on + strand, within OH686_12480 at 2627.363 kb on - strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.446 kb on + strand, within OH686_12480 at 2627.447 kb on - strand, within OH686_12480 at 2627.447 kb on - strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.563 kb on + strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.564 kb on - strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.638 kb on + strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.639 kb on - strand, within OH686_12480 at 2627.727 kb on + strand, within OH686_12480 at 2627.727 kb on + strand, within OH686_12480 at 2627.727 kb on + strand, within OH686_12480 at 2627.727 kb on + strand, within OH686_12480 at 2627.727 kb on + strand, within OH686_12480 at 2627.728 kb on - strand, within OH686_12480 at 2627.728 kb on - strand, within OH686_12480 at 2627.791 kb on + strand at 2627.792 kb on - strand at 2627.792 kb on - strand at 2627.792 kb on - strand at 2627.792 kb on - strand at 2627.792 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.839 kb on - strand at 2627.846 kb on - strand at 2627.846 kb on - strand at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.026 kb on + strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.027 kb on - strand, within OH686_12485 at 2628.038 kb on + strand, within OH686_12485 at 2628.038 kb on + strand, within OH686_12485 at 2628.038 kb on + strand, within OH686_12485 at 2628.039 kb on - strand, within OH686_12485 at 2628.039 kb on - strand, within OH686_12485 at 2628.470 kb on + strand, within OH686_12485 at 2628.536 kb on + strand, within OH686_12485 at 2628.575 kb on + strand, within OH686_12485 at 2628.575 kb on + strand, within OH686_12485 at 2628.575 kb on + strand, within OH686_12485 at 2628.576 kb on - strand, within OH686_12485 at 2628.576 kb on - strand, within OH686_12485 at 2628.576 kb on - strand, within OH686_12485 at 2628.576 kb on - strand, within OH686_12485 at 2628.576 kb on - strand, within OH686_12485 at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.628 kb on + strand at 2629.629 kb on - strand at 2629.629 kb on - strand at 2629.629 kb on - strand at 2629.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,626,910 + +0.2 2,626,967 + +0.3 2,626,967 + -0.7 2,626,967 + -0.1 2,626,967 + -0.4 2,626,967 + -0.7 2,626,968 + -0.3 2,626,968 - +0.0 2,626,968 - -0.1 2,626,968 - -0.7 2,626,968 - +0.3 2,626,968 - +0.1 2,626,968 - -0.4 2,626,969 + -0.1 2,626,969 + +0.5 2,626,969 + -0.1 2,626,969 + -0.4 2,626,969 + -0.7 2,626,969 + +0.7 2,626,969 + +0.7 2,626,969 + -0.5 2,626,969 + +0.2 2,626,969 + -0.5 2,626,969 + -0.4 2,626,969 + -0.4 2,626,969 + -0.3 2,626,969 + +0.1 2,626,969 + +0.1 2,626,970 - +0.0 2,626,970 - +0.0 2,626,970 - +0.0 2,626,970 - -1.9 2,626,970 - -1.7 2,626,970 - -0.4 2,626,970 - -0.6 2,626,970 - -0.8 2,626,970 - -0.3 2,626,970 - +0.1 2,627,191 + OH686_12480 0.24 -0.6 2,627,191 + OH686_12480 0.24 -1.1 2,627,191 + OH686_12480 0.24 +0.9 2,627,191 + OH686_12480 0.24 -0.5 2,627,192 - OH686_12480 0.24 +0.1 2,627,192 - OH686_12480 0.24 -0.6 2,627,192 - OH686_12480 0.24 -1.7 2,627,192 - OH686_12480 0.24 -0.2 2,627,192 - OH686_12480 0.24 +1.0 2,627,232 + OH686_12480 0.28 -0.1 2,627,233 - OH686_12480 0.28 -0.5 2,627,233 - OH686_12480 0.28 +0.1 2,627,233 - OH686_12480 0.28 -1.3 2,627,362 + OH686_12480 0.43 +0.7 2,627,363 - OH686_12480 0.43 +0.1 2,627,446 + OH686_12480 0.53 +0.1 2,627,446 + OH686_12480 0.53 +0.4 2,627,446 + OH686_12480 0.53 -0.4 2,627,446 + OH686_12480 0.53 +0.3 2,627,446 + OH686_12480 0.53 +0.2 2,627,446 + OH686_12480 0.53 -0.2 2,627,446 + OH686_12480 0.53 +0.6 2,627,447 - OH686_12480 0.53 +0.0 2,627,447 - OH686_12480 0.53 -0.6 2,627,563 + OH686_12480 0.67 +0.1 2,627,563 + OH686_12480 0.67 -0.8 2,627,563 + OH686_12480 0.67 -0.4 2,627,563 + OH686_12480 0.67 -0.4 2,627,563 + OH686_12480 0.67 -0.4 2,627,563 + OH686_12480 0.67 +0.1 2,627,564 - OH686_12480 0.67 +0.5 2,627,564 - OH686_12480 0.67 -1.4 2,627,564 - OH686_12480 0.67 -0.1 2,627,564 - OH686_12480 0.67 -0.7 2,627,564 - OH686_12480 0.67 +0.0 2,627,564 - OH686_12480 0.67 +0.4 2,627,564 - OH686_12480 0.67 +0.9 2,627,564 - OH686_12480 0.67 -0.6 2,627,564 - OH686_12480 0.67 -0.6 2,627,564 - OH686_12480 0.67 -0.5 2,627,638 + OH686_12480 0.75 +0.3 2,627,638 + OH686_12480 0.75 -0.4 2,627,638 + OH686_12480 0.75 -1.4 2,627,638 + OH686_12480 0.75 +0.3 2,627,638 + OH686_12480 0.75 -0.1 2,627,638 + OH686_12480 0.75 -0.4 2,627,638 + OH686_12480 0.75 +0.6 2,627,638 + OH686_12480 0.75 +0.1 2,627,638 + OH686_12480 0.75 -0.1 2,627,638 + OH686_12480 0.75 +0.9 2,627,638 + OH686_12480 0.75 -0.7 2,627,638 + OH686_12480 0.75 -2.1 2,627,638 + OH686_12480 0.75 +0.6 2,627,638 + OH686_12480 0.75 -0.6 2,627,638 + OH686_12480 0.75 +0.0 2,627,638 + OH686_12480 0.75 -0.1 2,627,638 + OH686_12480 0.75 -0.6 2,627,638 + OH686_12480 0.75 +0.5 2,627,638 + OH686_12480 0.75 +0.9 2,627,638 + OH686_12480 0.75 +0.3 2,627,638 + OH686_12480 0.75 +0.5 2,627,639 - OH686_12480 0.75 -0.1 2,627,639 - OH686_12480 0.75 -0.1 2,627,639 - OH686_12480 0.75 +0.2 2,627,639 - OH686_12480 0.75 -0.6 2,627,639 - OH686_12480 0.75 -0.1 2,627,639 - OH686_12480 0.75 -2.8 2,627,639 - OH686_12480 0.75 +1.4 2,627,639 - OH686_12480 0.75 -0.0 2,627,639 - OH686_12480 0.75 -0.3 2,627,639 - OH686_12480 0.75 +0.2 2,627,727 + OH686_12480 0.85 +0.1 2,627,727 + OH686_12480 0.85 -0.7 2,627,727 + OH686_12480 0.85 -0.3 2,627,727 + OH686_12480 0.85 -0.5 2,627,727 + OH686_12480 0.85 -0.7 2,627,728 - OH686_12480 0.86 -0.4 2,627,728 - OH686_12480 0.86 -0.1 2,627,791 + -0.4 2,627,792 - -0.1 2,627,792 - -1.1 2,627,792 - -1.2 2,627,792 - -0.1 2,627,792 - +0.7 2,627,839 - -0.3 2,627,839 - -0.3 2,627,839 - -0.7 2,627,839 - -2.2 2,627,839 - -1.5 2,627,839 - -0.2 2,627,839 - -1.1 2,627,839 - -0.7 2,627,846 - +0.5 2,627,846 - +0.4 2,628,026 + OH686_12485 0.21 -1.0 2,628,026 + OH686_12485 0.21 -2.2 2,628,026 + OH686_12485 0.21 -0.1 2,628,026 + OH686_12485 0.21 -1.3 2,628,026 + OH686_12485 0.21 -2.4 2,628,026 + OH686_12485 0.21 -1.3 2,628,026 + OH686_12485 0.21 -3.0 2,628,027 - OH686_12485 0.21 -1.4 2,628,027 - OH686_12485 0.21 -0.5 2,628,027 - OH686_12485 0.21 -1.8 2,628,027 - OH686_12485 0.21 -0.7 2,628,027 - OH686_12485 0.21 -2.5 2,628,027 - OH686_12485 0.21 -1.1 2,628,027 - OH686_12485 0.21 -1.3 2,628,027 - OH686_12485 0.21 -0.8 2,628,027 - OH686_12485 0.21 -1.1 2,628,038 + OH686_12485 0.22 -0.7 2,628,038 + OH686_12485 0.22 -2.6 2,628,038 + OH686_12485 0.22 -2.5 2,628,039 - OH686_12485 0.23 -0.1 2,628,039 - OH686_12485 0.23 -2.1 2,628,470 + OH686_12485 0.75 -1.1 2,628,536 + OH686_12485 0.83 -0.1 2,628,575 + OH686_12485 0.88 -1.8 2,628,575 + OH686_12485 0.88 -2.4 2,628,575 + OH686_12485 0.88 -2.1 2,628,576 - OH686_12485 0.88 -1.3 2,628,576 - OH686_12485 0.88 -0.1 2,628,576 - OH686_12485 0.88 -2.0 2,628,576 - OH686_12485 0.88 -2.1 2,628,576 - OH686_12485 0.88 -2.0 2,629,628 + -0.1 2,629,628 + -0.0 2,629,628 + -0.6 2,629,628 + -0.7 2,629,628 + +1.1 2,629,628 + +0.4 2,629,628 + +0.4 2,629,629 - -0.2 2,629,629 - +1.6 2,629,629 - -0.4 2,629,629 - -0.1
Or see this region's nucleotide sequence