Strain Fitness in Pseudomonas sp. S08-1 around OH686_12485

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12475 and OH686_12480 are separated by 88 nucleotidesOH686_12480 and OH686_12485 are separated by 1 nucleotidesOH686_12485 and OH686_12490 overlap by 4 nucleotides OH686_12475: OH686_12475 - Murein-DD-endopeptidase , at 2,626,004 to 2,626,897 _12475 OH686_12480: OH686_12480 - MadN protein, at 2,626,986 to 2,627,852 _12480 OH686_12485: OH686_12485 - Shikimate 5-dehydrogenase I alpha , at 2,627,854 to 2,628,675 _12485 OH686_12490: OH686_12490 - Coproporphyrinogen III oxidase, aerobic , at 2,628,672 to 2,629,628 _12490 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1at 2626.910 kb on + strandat 2626.967 kb on + strandat 2626.967 kb on + strandat 2626.967 kb on + strandat 2626.967 kb on + strandat 2626.967 kb on + strandat 2626.968 kb on + strandat 2626.968 kb on - strandat 2626.968 kb on - strandat 2626.968 kb on - strandat 2626.968 kb on - strandat 2626.968 kb on - strandat 2626.968 kb on - strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.969 kb on + strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2626.970 kb on - strandat 2627.191 kb on + strand, within OH686_12480at 2627.191 kb on + strand, within OH686_12480at 2627.191 kb on + strand, within OH686_12480at 2627.191 kb on + strand, within OH686_12480at 2627.192 kb on - strand, within OH686_12480at 2627.192 kb on - strand, within OH686_12480at 2627.192 kb on - strand, within OH686_12480at 2627.192 kb on - strand, within OH686_12480at 2627.192 kb on - strand, within OH686_12480at 2627.232 kb on + strand, within OH686_12480at 2627.233 kb on - strand, within OH686_12480at 2627.233 kb on - strand, within OH686_12480at 2627.233 kb on - strand, within OH686_12480at 2627.362 kb on + strand, within OH686_12480at 2627.363 kb on - strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.446 kb on + strand, within OH686_12480at 2627.447 kb on - strand, within OH686_12480at 2627.447 kb on - strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.563 kb on + strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.564 kb on - strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.638 kb on + strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.639 kb on - strand, within OH686_12480at 2627.727 kb on + strand, within OH686_12480at 2627.727 kb on + strand, within OH686_12480at 2627.727 kb on + strand, within OH686_12480at 2627.727 kb on + strand, within OH686_12480at 2627.727 kb on + strand, within OH686_12480at 2627.728 kb on - strand, within OH686_12480at 2627.728 kb on - strand, within OH686_12480at 2627.791 kb on + strandat 2627.792 kb on - strandat 2627.792 kb on - strandat 2627.792 kb on - strandat 2627.792 kb on - strandat 2627.792 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.839 kb on - strandat 2627.846 kb on - strandat 2627.846 kb on - strandat 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.026 kb on + strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.027 kb on - strand, within OH686_12485at 2628.038 kb on + strand, within OH686_12485at 2628.038 kb on + strand, within OH686_12485at 2628.038 kb on + strand, within OH686_12485at 2628.039 kb on - strand, within OH686_12485at 2628.039 kb on - strand, within OH686_12485at 2628.470 kb on + strand, within OH686_12485at 2628.536 kb on + strand, within OH686_12485at 2628.575 kb on + strand, within OH686_12485at 2628.575 kb on + strand, within OH686_12485at 2628.575 kb on + strand, within OH686_12485at 2628.576 kb on - strand, within OH686_12485at 2628.576 kb on - strand, within OH686_12485at 2628.576 kb on - strand, within OH686_12485at 2628.576 kb on - strand, within OH686_12485at 2628.576 kb on - strand, within OH686_12485at 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.628 kb on + strandat 2629.629 kb on - strandat 2629.629 kb on - strandat 2629.629 kb on - strandat 2629.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,626,910 + +0.2
2,626,967 + +0.3
2,626,967 + -0.7
2,626,967 + -0.1
2,626,967 + -0.4
2,626,967 + -0.7
2,626,968 + -0.3
2,626,968 - +0.0
2,626,968 - -0.1
2,626,968 - -0.7
2,626,968 - +0.3
2,626,968 - +0.1
2,626,968 - -0.4
2,626,969 + -0.1
2,626,969 + +0.5
2,626,969 + -0.1
2,626,969 + -0.4
2,626,969 + -0.7
2,626,969 + +0.7
2,626,969 + +0.7
2,626,969 + -0.5
2,626,969 + +0.2
2,626,969 + -0.5
2,626,969 + -0.4
2,626,969 + -0.4
2,626,969 + -0.3
2,626,969 + +0.1
2,626,969 + +0.1
2,626,970 - +0.0
2,626,970 - +0.0
2,626,970 - +0.0
2,626,970 - -1.9
2,626,970 - -1.7
2,626,970 - -0.4
2,626,970 - -0.6
2,626,970 - -0.8
2,626,970 - -0.3
2,626,970 - +0.1
2,627,191 + OH686_12480 0.24 -0.6
2,627,191 + OH686_12480 0.24 -1.1
2,627,191 + OH686_12480 0.24 +0.9
2,627,191 + OH686_12480 0.24 -0.5
2,627,192 - OH686_12480 0.24 +0.1
2,627,192 - OH686_12480 0.24 -0.6
2,627,192 - OH686_12480 0.24 -1.7
2,627,192 - OH686_12480 0.24 -0.2
2,627,192 - OH686_12480 0.24 +1.0
2,627,232 + OH686_12480 0.28 -0.1
2,627,233 - OH686_12480 0.28 -0.5
2,627,233 - OH686_12480 0.28 +0.1
2,627,233 - OH686_12480 0.28 -1.3
2,627,362 + OH686_12480 0.43 +0.7
2,627,363 - OH686_12480 0.43 +0.1
2,627,446 + OH686_12480 0.53 +0.1
2,627,446 + OH686_12480 0.53 +0.4
2,627,446 + OH686_12480 0.53 -0.4
2,627,446 + OH686_12480 0.53 +0.3
2,627,446 + OH686_12480 0.53 +0.2
2,627,446 + OH686_12480 0.53 -0.2
2,627,446 + OH686_12480 0.53 +0.6
2,627,447 - OH686_12480 0.53 +0.0
2,627,447 - OH686_12480 0.53 -0.6
2,627,563 + OH686_12480 0.67 +0.1
2,627,563 + OH686_12480 0.67 -0.8
2,627,563 + OH686_12480 0.67 -0.4
2,627,563 + OH686_12480 0.67 -0.4
2,627,563 + OH686_12480 0.67 -0.4
2,627,563 + OH686_12480 0.67 +0.1
2,627,564 - OH686_12480 0.67 +0.5
2,627,564 - OH686_12480 0.67 -1.4
2,627,564 - OH686_12480 0.67 -0.1
2,627,564 - OH686_12480 0.67 -0.7
2,627,564 - OH686_12480 0.67 +0.0
2,627,564 - OH686_12480 0.67 +0.4
2,627,564 - OH686_12480 0.67 +0.9
2,627,564 - OH686_12480 0.67 -0.6
2,627,564 - OH686_12480 0.67 -0.6
2,627,564 - OH686_12480 0.67 -0.5
2,627,638 + OH686_12480 0.75 +0.3
2,627,638 + OH686_12480 0.75 -0.4
2,627,638 + OH686_12480 0.75 -1.4
2,627,638 + OH686_12480 0.75 +0.3
2,627,638 + OH686_12480 0.75 -0.1
2,627,638 + OH686_12480 0.75 -0.4
2,627,638 + OH686_12480 0.75 +0.6
2,627,638 + OH686_12480 0.75 +0.1
2,627,638 + OH686_12480 0.75 -0.1
2,627,638 + OH686_12480 0.75 +0.9
2,627,638 + OH686_12480 0.75 -0.7
2,627,638 + OH686_12480 0.75 -2.1
2,627,638 + OH686_12480 0.75 +0.6
2,627,638 + OH686_12480 0.75 -0.6
2,627,638 + OH686_12480 0.75 +0.0
2,627,638 + OH686_12480 0.75 -0.1
2,627,638 + OH686_12480 0.75 -0.6
2,627,638 + OH686_12480 0.75 +0.5
2,627,638 + OH686_12480 0.75 +0.9
2,627,638 + OH686_12480 0.75 +0.3
2,627,638 + OH686_12480 0.75 +0.5
2,627,639 - OH686_12480 0.75 -0.1
2,627,639 - OH686_12480 0.75 -0.1
2,627,639 - OH686_12480 0.75 +0.2
2,627,639 - OH686_12480 0.75 -0.6
2,627,639 - OH686_12480 0.75 -0.1
2,627,639 - OH686_12480 0.75 -2.8
2,627,639 - OH686_12480 0.75 +1.4
2,627,639 - OH686_12480 0.75 -0.0
2,627,639 - OH686_12480 0.75 -0.3
2,627,639 - OH686_12480 0.75 +0.2
2,627,727 + OH686_12480 0.85 +0.1
2,627,727 + OH686_12480 0.85 -0.7
2,627,727 + OH686_12480 0.85 -0.3
2,627,727 + OH686_12480 0.85 -0.5
2,627,727 + OH686_12480 0.85 -0.7
2,627,728 - OH686_12480 0.86 -0.4
2,627,728 - OH686_12480 0.86 -0.1
2,627,791 + -0.4
2,627,792 - -0.1
2,627,792 - -1.1
2,627,792 - -1.2
2,627,792 - -0.1
2,627,792 - +0.7
2,627,839 - -0.3
2,627,839 - -0.3
2,627,839 - -0.7
2,627,839 - -2.2
2,627,839 - -1.5
2,627,839 - -0.2
2,627,839 - -1.1
2,627,839 - -0.7
2,627,846 - +0.5
2,627,846 - +0.4
2,628,026 + OH686_12485 0.21 -1.0
2,628,026 + OH686_12485 0.21 -2.2
2,628,026 + OH686_12485 0.21 -0.1
2,628,026 + OH686_12485 0.21 -1.3
2,628,026 + OH686_12485 0.21 -2.4
2,628,026 + OH686_12485 0.21 -1.3
2,628,026 + OH686_12485 0.21 -3.0
2,628,027 - OH686_12485 0.21 -1.4
2,628,027 - OH686_12485 0.21 -0.5
2,628,027 - OH686_12485 0.21 -1.8
2,628,027 - OH686_12485 0.21 -0.7
2,628,027 - OH686_12485 0.21 -2.5
2,628,027 - OH686_12485 0.21 -1.1
2,628,027 - OH686_12485 0.21 -1.3
2,628,027 - OH686_12485 0.21 -0.8
2,628,027 - OH686_12485 0.21 -1.1
2,628,038 + OH686_12485 0.22 -0.7
2,628,038 + OH686_12485 0.22 -2.6
2,628,038 + OH686_12485 0.22 -2.5
2,628,039 - OH686_12485 0.23 -0.1
2,628,039 - OH686_12485 0.23 -2.1
2,628,470 + OH686_12485 0.75 -1.1
2,628,536 + OH686_12485 0.83 -0.1
2,628,575 + OH686_12485 0.88 -1.8
2,628,575 + OH686_12485 0.88 -2.4
2,628,575 + OH686_12485 0.88 -2.1
2,628,576 - OH686_12485 0.88 -1.3
2,628,576 - OH686_12485 0.88 -0.1
2,628,576 - OH686_12485 0.88 -2.0
2,628,576 - OH686_12485 0.88 -2.1
2,628,576 - OH686_12485 0.88 -2.0
2,629,628 + -0.1
2,629,628 + -0.0
2,629,628 + -0.6
2,629,628 + -0.7
2,629,628 + +1.1
2,629,628 + +0.4
2,629,628 + +0.4
2,629,629 - -0.2
2,629,629 - +1.6
2,629,629 - -0.4
2,629,629 - -0.1

Or see this region's nucleotide sequence