Strain Fitness in Pseudomonas sp. S08-1 around OH686_12240

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12230 and OH686_12235 are separated by 9 nucleotidesOH686_12235 and OH686_12240 are separated by 64 nucleotidesOH686_12240 and OH686_12245 overlap by 4 nucleotidesOH686_12245 and OH686_12250 overlap by 1 nucleotides OH686_12230: OH686_12230 - hypothetical protein, at 2,585,935 to 2,586,273 _12230 OH686_12235: OH686_12235 - Zinc ABC transporter, substrate-binding protein ZnuA, at 2,586,283 to 2,587,188 _12235 OH686_12240: OH686_12240 - Zinc uptake regulation protein Zur, at 2,587,253 to 2,587,753 _12240 OH686_12245: OH686_12245 - Zinc ABC transporter, ATP-binding protein ZnuC, at 2,587,750 to 2,588,541 _12245 OH686_12250: OH686_12250 - Zinc ABC transporter, permease protein ZnuB, at 2,588,541 to 2,589,329 _12250 Position (kb) 2587 2588Strain fitness (log2 ratio) -3 -2 -1 0 1at 2586.341 kb on + strandat 2586.341 kb on + strandat 2586.341 kb on + strandat 2586.342 kb on - strandat 2586.342 kb on - strandat 2586.342 kb on - strandat 2586.342 kb on - strandat 2586.342 kb on - strandat 2586.469 kb on + strand, within OH686_12235at 2586.470 kb on - strand, within OH686_12235at 2586.555 kb on - strand, within OH686_12235at 2586.555 kb on - strand, within OH686_12235at 2586.569 kb on + strand, within OH686_12235at 2586.871 kb on + strand, within OH686_12235at 2586.872 kb on - strand, within OH686_12235at 2586.895 kb on + strand, within OH686_12235at 2586.968 kb on + strand, within OH686_12235at 2586.969 kb on - strand, within OH686_12235at 2587.219 kb on - strandat 2587.223 kb on + strandat 2587.433 kb on + strand, within OH686_12240at 2587.433 kb on + strand, within OH686_12240at 2587.433 kb on + strand, within OH686_12240at 2587.434 kb on - strand, within OH686_12240at 2587.434 kb on - strand, within OH686_12240at 2587.559 kb on - strand, within OH686_12240at 2587.559 kb on - strand, within OH686_12240at 2587.719 kb on + strandat 2587.719 kb on + strandat 2587.719 kb on + strandat 2587.719 kb on + strandat 2587.719 kb on + strandat 2587.720 kb on - strandat 2587.720 kb on - strandat 2587.720 kb on - strandat 2587.720 kb on - strandat 2587.720 kb on - strandat 2587.963 kb on + strand, within OH686_12245at 2587.963 kb on + strand, within OH686_12245at 2587.963 kb on + strand, within OH686_12245at 2587.963 kb on + strand, within OH686_12245at 2587.964 kb on - strand, within OH686_12245at 2587.964 kb on - strand, within OH686_12245at 2587.964 kb on - strand, within OH686_12245at 2587.964 kb on - strand, within OH686_12245at 2587.964 kb on - strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.129 kb on + strand, within OH686_12245at 2588.130 kb on - strand, within OH686_12245at 2588.130 kb on - strand, within OH686_12245at 2588.230 kb on + strand, within OH686_12245at 2588.230 kb on + strand, within OH686_12245at 2588.231 kb on - strand, within OH686_12245at 2588.231 kb on - strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.431 kb on + strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.432 kb on - strand, within OH686_12245at 2588.637 kb on + strand, within OH686_12250at 2588.637 kb on + strand, within OH686_12250at 2588.637 kb on + strand, within OH686_12250at 2588.638 kb on - strand, within OH686_12250at 2588.638 kb on - strand, within OH686_12250at 2588.638 kb on - strand, within OH686_12250at 2588.638 kb on - strand, within OH686_12250at 2588.638 kb on - strand, within OH686_12250

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,586,341 + -2.1
2,586,341 + -1.8
2,586,341 + -0.7
2,586,342 - -1.8
2,586,342 - -3.0
2,586,342 - -1.3
2,586,342 - -2.7
2,586,342 - -2.9
2,586,469 + OH686_12235 0.21 -1.0
2,586,470 - OH686_12235 0.21 -2.5
2,586,555 - OH686_12235 0.30 -1.3
2,586,555 - OH686_12235 0.30 -2.5
2,586,569 + OH686_12235 0.32 -0.6
2,586,871 + OH686_12235 0.65 -0.1
2,586,872 - OH686_12235 0.65 -0.1
2,586,895 + OH686_12235 0.68 -2.0
2,586,968 + OH686_12235 0.76 -1.0
2,586,969 - OH686_12235 0.76 -1.6
2,587,219 - -0.2
2,587,223 + -0.3
2,587,433 + OH686_12240 0.36 -0.9
2,587,433 + OH686_12240 0.36 +0.1
2,587,433 + OH686_12240 0.36 -0.8
2,587,434 - OH686_12240 0.36 -2.3
2,587,434 - OH686_12240 0.36 -1.6
2,587,559 - OH686_12240 0.61 -2.8
2,587,559 - OH686_12240 0.61 -1.6
2,587,719 + -0.4
2,587,719 + -0.1
2,587,719 + -0.3
2,587,719 + -0.2
2,587,719 + +0.0
2,587,720 - -0.4
2,587,720 - -0.8
2,587,720 - +0.1
2,587,720 - +0.1
2,587,720 - -0.4
2,587,963 + OH686_12245 0.27 -1.6
2,587,963 + OH686_12245 0.27 -1.7
2,587,963 + OH686_12245 0.27 -1.7
2,587,963 + OH686_12245 0.27 -1.3
2,587,964 - OH686_12245 0.27 -0.7
2,587,964 - OH686_12245 0.27 -1.7
2,587,964 - OH686_12245 0.27 -1.3
2,587,964 - OH686_12245 0.27 -3.1
2,587,964 - OH686_12245 0.27 -0.7
2,588,129 + OH686_12245 0.48 -0.1
2,588,129 + OH686_12245 0.48 -2.0
2,588,129 + OH686_12245 0.48 -1.0
2,588,129 + OH686_12245 0.48 -1.1
2,588,129 + OH686_12245 0.48 -1.6
2,588,129 + OH686_12245 0.48 -2.8
2,588,130 - OH686_12245 0.48 -0.5
2,588,130 - OH686_12245 0.48 -1.3
2,588,230 + OH686_12245 0.61 -1.0
2,588,230 + OH686_12245 0.61 -2.0
2,588,231 - OH686_12245 0.61 -0.7
2,588,231 - OH686_12245 0.61 -1.1
2,588,431 + OH686_12245 0.86 +1.0
2,588,431 + OH686_12245 0.86 +0.1
2,588,431 + OH686_12245 0.86 +0.1
2,588,431 + OH686_12245 0.86 -0.3
2,588,431 + OH686_12245 0.86 -1.2
2,588,431 + OH686_12245 0.86 +0.2
2,588,431 + OH686_12245 0.86 -0.7
2,588,431 + OH686_12245 0.86 -2.0
2,588,431 + OH686_12245 0.86 -0.7
2,588,431 + OH686_12245 0.86 -0.1
2,588,431 + OH686_12245 0.86 +0.8
2,588,431 + OH686_12245 0.86 +0.6
2,588,431 + OH686_12245 0.86 +0.9
2,588,431 + OH686_12245 0.86 -0.0
2,588,431 + OH686_12245 0.86 -0.8
2,588,431 + OH686_12245 0.86 +0.6
2,588,431 + OH686_12245 0.86 -0.6
2,588,432 - OH686_12245 0.86 -1.1
2,588,432 - OH686_12245 0.86 +0.3
2,588,432 - OH686_12245 0.86 -0.1
2,588,432 - OH686_12245 0.86 +0.5
2,588,432 - OH686_12245 0.86 -0.1
2,588,432 - OH686_12245 0.86 -0.6
2,588,432 - OH686_12245 0.86 +0.3
2,588,432 - OH686_12245 0.86 -0.8
2,588,432 - OH686_12245 0.86 +0.3
2,588,432 - OH686_12245 0.86 -0.3
2,588,432 - OH686_12245 0.86 +0.2
2,588,432 - OH686_12245 0.86 -2.1
2,588,432 - OH686_12245 0.86 -0.6
2,588,432 - OH686_12245 0.86 +0.8
2,588,432 - OH686_12245 0.86 +0.1
2,588,432 - OH686_12245 0.86 -0.1
2,588,432 - OH686_12245 0.86 +0.4
2,588,432 - OH686_12245 0.86 -0.4
2,588,432 - OH686_12245 0.86 -0.1
2,588,432 - OH686_12245 0.86 -0.2
2,588,432 - OH686_12245 0.86 -0.5
2,588,432 - OH686_12245 0.86 +0.4
2,588,432 - OH686_12245 0.86 +0.3
2,588,637 + OH686_12250 0.12 -0.5
2,588,637 + OH686_12250 0.12 +0.3
2,588,637 + OH686_12250 0.12 -2.8
2,588,638 - OH686_12250 0.12 -1.5
2,588,638 - OH686_12250 0.12 -0.7
2,588,638 - OH686_12250 0.12 -1.0
2,588,638 - OH686_12250 0.12 -2.9
2,588,638 - OH686_12250 0.12 -2.6

Or see this region's nucleotide sequence